Analysis of interatomic Contacts of Structural Units in PDB entry:
8JCX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JCX entry

There are 2 chains in PDB entry 8JCX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
2	LYS 24	LEU 818
3	ARG 30	ILE 825

There are 46 helices in PDB entry 8JCX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	2	59	74	Right-handed alpha
Helix 2	AA2	2	94	110	Right-handed alpha
Helix 3	AA3	2	144	158	Right-handed alpha
Helix 4	AA4	2	170	174	Right-handed 310
Helix 5	AA5	2	189	202	Right-handed alpha
Helix 6	AA6	2	219	230	Right-handed alpha
Helix 7	AA7	2	246	260	Right-handed alpha
Helix 8	AA8	2	271	286	Right-handed alpha
Helix 9	AA9	2	324	332	Right-handed alpha
Helix 10	AB1	2	344	353	Right-handed alpha
Helix 11	AB2	2	377	400	Right-handed alpha
Helix 12	AB3	2	414	422	Right-handed alpha
Helix 13	AB4	2	423	426	Right-handed 310
Helix 14	AB5	2	482	485	Right-handed 310
Helix 15	AB6	2	568	592	Right-handed alpha
Helix 16	AB7	2	595	601	Right-handed alpha
Helix 17	AB8	2	602	623	Right-handed alpha
Helix 18	AB9	2	631	660	Right-handed alpha
Helix 19	AC1	2	676	702	Right-handed alpha
Helix 20	AC2	2	723	749	Right-handed alpha
Helix 21	AC3	2	757	784	Right-handed alpha
Helix 22	AC4	2	786	818	Right-handed alpha
Helix 23	AC5	3	65	82	Right-handed alpha
Helix 24	AC6	3	101	109	Right-handed alpha
Helix 25	AC7	3	109	114	Right-handed alpha
Helix 26	AC8	3	115	117	Right-handed 310
Helix 27	AC9	3	150	162	Right-handed alpha
Helix 28	AD1	3	176	180	Right-handed 310
Helix 29	AD2	3	195	208	Right-handed alpha
Helix 30	AD3	3	220	234	Right-handed alpha
Helix 31	AD4	3	235	238	Right-handed 310
Helix 32	AD5	3	252	266	Right-handed alpha
Helix 33	AD6	3	277	290	Right-handed alpha
Helix 34	AD7	3	330	339	Right-handed alpha
Helix 35	AD8	3	350	360	Right-handed alpha
Helix 36	AD9	3	380	384	Right-handed 310
Helix 37	AE1	3	389	412	Right-handed alpha
Helix 38	AE2	3	426	433	Right-handed alpha
Helix 39	AE3	3	494	497	Right-handed 310
Helix 40	AE4	3	578	601	Right-handed alpha
Helix 41	AE5	3	614	632	Right-handed alpha
Helix 42	AE6	3	639	665	Right-handed alpha
Helix 43	AE7	3	685	706	Right-handed alpha
Helix 44	AE8	3	732	759	Right-handed alpha
Helix 45	AE9	3	764	791	Right-handed alpha
Helix 46	AF1	3	797	825	Right-handed alpha

There are 14 sheets in PDB entry 8JCX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	26	27	first strand
Strand 2	2	84	90	anti-parallel
Strand 3	2	32	38	parallel
Strand 4	2	136	141	parallel
Strand 5	2	162	164	parallel
Strand 6	2	181	183	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	206	207	first strand
Strand 2	2	234	235	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	210	212	first strand
Strand 2	2	239	241	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	266	268	first strand
Strand 2	2	291	293	parallel
Strand 3	2	315	319	parallel
Strand 4	2	453	460	anti-parallel
Strand 5	2	466	474	anti-parallel
Strand 6	2	478	480	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	530	533	first strand
Strand 2	2	536	538	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	32	35	first strand
Strand 2	3	91	97	anti-parallel
Strand 3	3	39	45	parallel
Strand 4	3	142	147	parallel
Strand 5	3	168	170	parallel
Strand 6	3	187	189	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	48	50	first strand
Strand 2	3	57	60	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	240	246	first strand
Strand 2	3	212	217	parallel
Strand 3	3	271	275	parallel
Strand 4	3	296	298	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	320	325	first strand
Strand 2	3	466	474	anti-parallel
Strand 3	3	477	479	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	320	325	first strand
Strand 2	3	466	474	anti-parallel
Strand 3	3	482	486	anti-parallel
Strand 4	3	490	492	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	440	441	first strand
Strand 2	3	453	454	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	518	521	first strand
Strand 2	3	530	533	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	539	540	first strand
Strand 2	3	546	547	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	553	554	first strand
Strand 2	3	563	564	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JCX

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JCX