Analysis of interatomic Contacts of Structural Units in PDB entry:
8JCY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JCY entry

There are 2 chains in PDB entry 8JCY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
2	LYS 24	PHE 819
3	ARG 30	ILE 826

There are 45 helices in PDB entry 8JCY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	2	58	74	Right-handed alpha
Helix 2	AA2	2	94	103	Right-handed alpha
Helix 3	AA3	2	104	110	Right-handed alpha
Helix 4	AA4	2	144	157	Right-handed alpha
Helix 5	AA5	2	169	173	Right-handed 310
Helix 6	AA6	2	187	202	Right-handed alpha
Helix 7	AA7	2	214	230	Right-handed alpha
Helix 8	AA8	2	246	259	Right-handed alpha
Helix 9	AA9	2	271	285	Right-handed alpha
Helix 10	AB1	2	324	333	Right-handed alpha
Helix 11	AB2	2	344	353	Right-handed alpha
Helix 12	AB3	2	377	400	Right-handed alpha
Helix 13	AB4	2	407	411	Right-handed 310
Helix 14	AB5	2	414	422	Right-handed alpha
Helix 15	AB6	2	485	489	Right-handed 310
Helix 16	AB7	2	568	591	Right-handed alpha
Helix 17	AB8	2	595	601	Right-handed alpha
Helix 18	AB9	2	602	625	Right-handed alpha
Helix 19	AC1	2	628	659	Right-handed alpha
Helix 20	AC2	2	676	701	Right-handed alpha
Helix 21	AC3	2	725	749	Right-handed alpha
Helix 22	AC4	2	755	784	Right-handed alpha
Helix 23	AC5	2	786	808	Right-handed alpha
Helix 24	AC6	2	809	819	Right-handed alpha
Helix 25	AC7	3	66	82	Right-handed alpha
Helix 26	AC8	3	101	115	Right-handed alpha
Helix 27	AC9	3	150	162	Right-handed alpha
Helix 28	AD1	3	175	180	Right-handed 310
Helix 29	AD2	3	196	208	Right-handed alpha
Helix 30	AD3	3	221	237	Right-handed alpha
Helix 31	AD4	3	254	265	Right-handed alpha
Helix 32	AD5	3	277	291	Right-handed alpha
Helix 33	AD6	3	330	339	Right-handed alpha
Helix 34	AD7	3	350	360	Right-handed alpha
Helix 35	AD8	3	389	412	Right-handed alpha
Helix 36	AD9	3	426	433	Right-handed alpha
Helix 37	AE1	3	434	438	Right-handed 310
Helix 38	AE2	3	574	601	Right-handed alpha
Helix 39	AE3	3	610	633	Right-handed alpha
Helix 40	AE4	3	640	665	Right-handed alpha
Helix 41	AE5	3	683	706	Right-handed alpha
Helix 42	AE6	3	707	709	Right-handed 310
Helix 43	AE7	3	733	758	Right-handed alpha
Helix 44	AE8	3	764	792	Right-handed alpha
Helix 45	AE9	3	796	826	Right-handed alpha

There are 13 sheets in PDB entry 8JCY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	26	28	first strand
Strand 2	2	84	90	anti-parallel
Strand 3	2	32	38	parallel
Strand 4	2	136	141	parallel
Strand 5	2	162	164	parallel
Strand 6	2	181	183	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	41	43	first strand
Strand 2	2	50	53	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	234	235	first strand
Strand 2	2	206	212	parallel
Strand 3	2	239	241	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	234	235	first strand
Strand 2	2	206	212	parallel
Strand 3	2	265	268	parallel
Strand 4	2	290	293	parallel
Strand 5	2	315	319	parallel
Strand 6	2	453	460	anti-parallel
Strand 7	2	466	474	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	428	429	first strand
Strand 2	2	440	441	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	510	512	first strand
Strand 2	2	521	522	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	530	531	first strand
Strand 2	2	537	538	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	33	35	first strand
Strand 2	3	91	97	anti-parallel
Strand 3	3	39	45	parallel
Strand 4	3	142	147	parallel
Strand 5	3	168	170	parallel
Strand 6	3	187	189	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	48	50	first strand
Strand 2	3	57	60	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	240	247	first strand
Strand 2	3	212	218	parallel
Strand 3	3	271	274	parallel
Strand 4	3	296	299	parallel
Strand 5	3	321	325	parallel
Strand 6	3	465	473	anti-parallel
Strand 7	3	478	487	anti-parallel
Strand 8	3	490	492	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	361	362	first strand
Strand 2	3	371	372	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	440	441	first strand
Strand 2	3	453	454	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	518	519	first strand
Strand 2	3	532	533	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JCY

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JCY