Analysis of interatomic Contacts of Structural Units in PDB entry:
8JCZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JCZ entry

There are 2 chains in PDB entry 8JCZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
2
 LYS 24PHE 819
3
 ARG 30ILE 825
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 8JCZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
2
59 74Right-handed alpha
Helix 2
AA2
2
94 108Right-handed alpha
Helix 3
AA3
2
144 158Right-handed alpha
Helix 4
AA4
2
169 173Right-handed 310
Helix 5
AA5
2
188 202Right-handed alpha
Helix 6
AA6
2
214 231Right-handed alpha
Helix 7
AA7
2
246 259Right-handed alpha
Helix 8
AA8
2
271 286Right-handed alpha
Helix 9
AA9
2
324 333Right-handed alpha
Helix 10
AB1
2
344 353Right-handed alpha
Helix 11
AB2
2
377 400Right-handed alpha
Helix 12
AB3
2
414 422Right-handed alpha
Helix 13
AB4
2
565 567Right-handed 310
Helix 14
AB5
2
568 594Right-handed alpha
Helix 15
AB6
2
603 626Right-handed alpha
Helix 16
AB7
2
632 660Right-handed alpha
Helix 17
AB8
2
677 701Right-handed alpha
Helix 18
AB9
2
726 750Right-handed alpha
Helix 19
AC1
2
755 784Right-handed alpha
Helix 20
AC2
2
786 819Right-handed alpha
Helix 21
AC3
3
65 82Right-handed alpha
Helix 22
AC4
3
101 110Right-handed alpha
Helix 23
AC5
3
150 164Right-handed alpha
Helix 24
AC6
3
175 180Right-handed 310
Helix 25
AC7
3
194 208Right-handed alpha
Helix 26
AC8
3
221 237Right-handed alpha
Helix 27
AC9
3
252 265Right-handed alpha
Helix 28
AD1
3
277 292Right-handed alpha
Helix 29
AD2
3
313 318Right-handed alpha
Helix 30
AD3
3
330 339Right-handed alpha
Helix 31
AD4
3
350 359Right-handed alpha
Helix 32
AD5
3
387 389Right-handed 310
Helix 33
AD6
3
390 412Right-handed alpha
Helix 34
AD7
3
419 423Right-handed 310
Helix 35
AD8
3
426 434Right-handed alpha
Helix 36
AD9
3
493 497Right-handed 310
Helix 37
AE1
3
574 598Right-handed alpha
Helix 38
AE2
3
612 633Right-handed alpha
Helix 39
AE3
3
641 665Right-handed alpha
Helix 40
AE4
3
685 708Right-handed alpha
Helix 41
AE5
3
720 724Right-handed 310
Helix 42
AE6
3
737 758Right-handed alpha
Helix 43
AE7
3
768 792Right-handed alpha
Helix 44
AE8
3
796 825Right-handed alpha
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There are 12 sheets in PDB entry 8JCZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
25 28first strand
Strand 2
2
86 90anti-parallel
Strand 3
2
33 38parallel
Strand 4
2
136 139parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
41 43first strand
Strand 2
2
50 53anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
162 164first strand
Strand 2
2
181 183parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
206 207first strand
Strand 2
2
234 235parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
240 241first strand
Strand 2
2
210 212parallel
Strand 3
2
266 269parallel
Strand 4
2
291 293parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
314 319first strand
Strand 2
2
453 459anti-parallel
Strand 3
2
467 474anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
428 429first strand
Strand 2
2
440 441anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
507 513first strand
Strand 2
2
516 524anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
530 531first strand
Strand 2
2
537 538anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
33 35first strand
Strand 2
3
91 97anti-parallel
Strand 3
3
39 45parallel
Strand 4
3
142 147parallel
Strand 5
3
168 170parallel
Strand 6
3
187 189parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
48 50first strand
Strand 2
3
57 60anti-parallel
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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
240 244first strand
Strand 2
3
212 217parallel
Strand 3
3
271 275parallel
Strand 4
3
296 299parallel
Strand 5
3
321 325parallel
Strand 6
3
465 474anti-parallel
Strand 7
3
477 487anti-parallel
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