Analysis of interatomic Contacts of Structural Units in PDB entry:
8JD0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JD0 entry

There are 2 chains in PDB entry 8JD0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
2
 LYS 24GLN 820
3
 ARG 30PHE 828
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 52 helices in PDB entry 8JD0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
2
59 74Right-handed alpha
Helix 2
AA2
2
94 110Right-handed alpha
Helix 3
AA3
2
144 157Right-handed alpha
Helix 4
AA4
2
170 174Right-handed 310
Helix 5
AA5
2
187 189Right-handed 310
Helix 6
AA6
2
190 202Right-handed alpha
Helix 7
AA7
2
214 231Right-handed alpha
Helix 8
AA8
2
246 259Right-handed alpha
Helix 9
AA9
2
271 286Right-handed alpha
Helix 10
AB1
2
294 298Right-handed 310
Helix 11
AB2
2
300 305Right-handed alpha
Helix 12
AB3
2
326 333Right-handed alpha
Helix 13
AB4
2
344 353Right-handed alpha
Helix 14
AB5
2
375 377Right-handed 310
Helix 15
AB6
2
378 400Right-handed alpha
Helix 16
AB7
2
407 411Right-handed 310
Helix 17
AB8
2
414 421Right-handed alpha
Helix 18
AB9
2
422 426Right-handed 310
Helix 19
AC1
2
516 520Right-handed 310
Helix 20
AC2
2
564 567Right-handed 310
Helix 21
AC3
2
568 592Right-handed alpha
Helix 22
AC4
2
594 600Right-handed alpha
Helix 23
AC5
2
602 623Right-handed alpha
Helix 24
AC6
2
628 661Right-handed alpha
Helix 25
AC7
2
678 700Right-handed alpha
Helix 26
AC8
2
724 748Right-handed alpha
Helix 27
AC9
2
755 783Right-handed alpha
Helix 28
AD1
2
787 820Right-handed alpha
Helix 29
AD2
3
65 81Right-handed alpha
Helix 30
AD3
3
101 109Right-handed alpha
Helix 31
AD4
3
110 117Right-handed 310
Helix 32
AD5
3
150 165Right-handed alpha
Helix 33
AD6
3
193 208Right-handed alpha
Helix 34
AD7
3
220 237Right-handed alpha
Helix 35
AD8
3
254 265Right-handed alpha
Helix 36
AD9
3
277 291Right-handed alpha
Helix 37
AE1
3
330 339Right-handed alpha
Helix 38
AE2
3
350 359Right-handed alpha
Helix 39
AE3
3
387 389Right-handed 310
Helix 40
AE4
3
390 412Right-handed alpha
Helix 41
AE5
3
426 434Right-handed alpha
Helix 42
AE6
3
577 603Right-handed alpha
Helix 43
AE7
3
611 634Right-handed alpha
Helix 44
AE8
3
637 664Right-handed alpha
Helix 45
AE9
3
682 702Right-handed alpha
Helix 46
AF1
3
704 709Right-handed alpha
Helix 47
AF2
3
728 755Right-handed alpha
Helix 48
AF3
3
761 763Right-handed 310
Helix 49
AF4
3
764 791Right-handed alpha
Helix 50
AF5
3
798 804Right-handed alpha
Helix 51
AF6
3
804 819Right-handed alpha
Helix 52
AF7
3
819 828Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 8JD0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
84 90first strand
Strand 2
2
32 38parallel
Strand 3
2
136 139parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
162 164first strand
Strand 2
2
181 183parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
234 240first strand
Strand 2
2
206 211parallel
Strand 3
2
265 268parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
315 319first strand
Strand 2
2
453 459anti-parallel
Strand 3
2
467 474anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
33 34first strand
Strand 2
3
91 97anti-parallel
Strand 3
3
39 45parallel
Strand 4
3
142 146parallel
Strand 5
3
168 170parallel
Strand 6
3
188 189parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
48 49first strand
Strand 2
3
59 60anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
240 247first strand
Strand 2
3
212 218parallel
Strand 3
3
271 275parallel
Strand 4
3
296 299parallel
Strand 5
3
321 325parallel
Strand 6
3
466 474anti-parallel
Strand 7
3
477 485anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
440 441first strand
Strand 2
3
453 454anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
518 519first strand
Strand 2
3
532 533anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
554 555first strand
Strand 2
3
562 563anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il