Analysis of interatomic Contacts of Structural Units in PDB entry:
8JD1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JD1 entry

There are 2 chains in PDB entry 8JD1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
2
 LYS 24LEU 818
3
 ARG 30PRO 830
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 8JD1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
2
58 75Right-handed alpha
Helix 2
AA2
2
94 108Right-handed alpha
Helix 3
AA3
2
144 156Right-handed alpha
Helix 4
AA4
2
169 173Right-handed 310
Helix 5
AA5
2
190 202Right-handed alpha
Helix 6
AA6
2
214 229Right-handed alpha
Helix 7
AA7
2
246 258Right-handed alpha
Helix 8
AA8
2
271 286Right-handed alpha
Helix 9
AA9
2
295 298Right-handed 310
Helix 10
AB1
2
300 305Right-handed alpha
Helix 11
AB2
2
325 332Right-handed alpha
Helix 12
AB3
2
344 354Right-handed alpha
Helix 13
AB4
2
356 360Right-handed 310
Helix 14
AB5
2
377 400Right-handed alpha
Helix 15
AB6
2
407 411Right-handed 310
Helix 16
AB7
2
414 423Right-handed alpha
Helix 17
AB8
2
481 485Right-handed 310
Helix 18
AB9
2
568 593Right-handed alpha
Helix 19
AC1
2
596 600Right-handed 310
Helix 20
AC2
2
602 622Right-handed alpha
Helix 21
AC3
2
628 660Right-handed alpha
Helix 22
AC4
2
675 702Right-handed alpha
Helix 23
AC5
2
721 750Right-handed alpha
Helix 24
AC6
2
756 782Right-handed alpha
Helix 25
AC7
2
788 810Right-handed alpha
Helix 26
AC8
2
810 817Right-handed alpha
Helix 27
AC9
3
65 81Right-handed alpha
Helix 28
AD1
3
101 110Right-handed alpha
Helix 29
AD2
3
111 115Right-handed 310
Helix 30
AD3
3
150 165Right-handed alpha
Helix 31
AD4
3
195 208Right-handed alpha
Helix 32
AD5
3
220 237Right-handed alpha
Helix 33
AD6
3
255 265Right-handed alpha
Helix 34
AD7
3
277 292Right-handed alpha
Helix 35
AD8
3
330 339Right-handed alpha
Helix 36
AD9
3
350 359Right-handed alpha
Helix 37
AE1
3
380 384Right-handed 310
Helix 38
AE2
3
387 389Right-handed 310
Helix 39
AE3
3
390 412Right-handed alpha
Helix 40
AE4
3
419 423Right-handed 310
Helix 41
AE5
3
427 435Right-handed alpha
Helix 42
AE6
3
436 438Right-handed 310
Helix 43
AE7
3
575 577Right-handed 310
Helix 44
AE8
3
578 602Right-handed alpha
Helix 45
AE9
3
613 633Right-handed alpha
Helix 46
AF1
3
637 664Right-handed alpha
Helix 47
AF2
3
682 705Right-handed alpha
Helix 48
AF3
3
707 711Right-handed 310
Helix 49
AF4
3
733 754Right-handed alpha
Helix 50
AF5
3
761 792Right-handed alpha
Helix 51
AF6
3
799 829Right-handed alpha
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There are 8 sheets in PDB entry 8JD1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
26 28first strand
Strand 2
2
86 88anti-parallel
Strand 3
2
35 37parallel
Strand 4
2
139 141parallel
Strand 5
2
162 164parallel
Strand 6
2
181 183parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
206 210first strand
Strand 2
2
234 239parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
265 268first strand
Strand 2
2
290 293parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
317 319first strand
Strand 2
2
453 459anti-parallel
Strand 3
2
467 474anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
91 97first strand
Strand 2
3
39 45parallel
Strand 3
3
142 146parallel
Strand 4
3
168 170parallel
Strand 5
3
187 189parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
240 244first strand
Strand 2
3
212 216parallel
Strand 3
3
271 274parallel
Strand 4
3
296 299parallel
Strand 5
3
321 325parallel
Strand 6
3
466 471anti-parallel
Strand 7
3
480 486anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
554 555first strand
Strand 2
3
562 563anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
716 718first strand
Strand 2
3
727 729anti-parallel
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