Analysis of interatomic Contacts of Structural Units in PDB entry:
8JD2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JD2 entry

There are 2 chains in PDB entry 8JD2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
2
 LYS 23ILE 817
3
 ARG 30LEU 827
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 8JD2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
2
58 74Right-handed alpha
Helix 2
AA2
2
94 108Right-handed alpha
Helix 3
AA3
2
144 156Right-handed alpha
Helix 4
AA4
2
169 174Right-handed 310
Helix 5
AA5
2
187 202Right-handed alpha
Helix 6
AA6
2
215 231Right-handed alpha
Helix 7
AA7
2
246 259Right-handed alpha
Helix 8
AA8
2
271 285Right-handed alpha
Helix 9
AA9
2
324 333Right-handed alpha
Helix 10
AB1
2
344 353Right-handed alpha
Helix 11
AB2
2
375 377Right-handed 310
Helix 12
AB3
2
378 400Right-handed alpha
Helix 13
AB4
2
414 422Right-handed alpha
Helix 14
AB5
2
482 485Right-handed 310
Helix 15
AB6
2
489 493Right-handed 310
Helix 16
AB7
2
568 593Right-handed alpha
Helix 17
AB8
2
604 624Right-handed alpha
Helix 18
AB9
2
631 657Right-handed alpha
Helix 19
AC1
2
678 702Right-handed alpha
Helix 20
AC2
2
721 750Right-handed alpha
Helix 21
AC3
2
755 775Right-handed alpha
Helix 22
AC4
2
775 784Right-handed alpha
Helix 23
AC5
2
790 810Right-handed alpha
Helix 24
AC6
3
61 66Right-handed alpha
Helix 25
AC7
3
66 81Right-handed alpha
Helix 26
AC8
3
101 115Right-handed alpha
Helix 27
AC9
3
150 162Right-handed alpha
Helix 28
AD1
3
175 180Right-handed 310
Helix 29
AD2
3
193 208Right-handed alpha
Helix 30
AD3
3
222 237Right-handed alpha
Helix 31
AD4
3
252 264Right-handed alpha
Helix 32
AD5
3
277 290Right-handed alpha
Helix 33
AD6
3
313 318Right-handed alpha
Helix 34
AD7
3
330 338Right-handed alpha
Helix 35
AD8
3
350 359Right-handed alpha
Helix 36
AD9
3
387 389Right-handed 310
Helix 37
AE1
3
390 412Right-handed alpha
Helix 38
AE2
3
419 423Right-handed 310
Helix 39
AE3
3
426 434Right-handed alpha
Helix 40
AE4
3
449 451Right-handed 310
Helix 41
AE5
3
494 497Right-handed 310
Helix 42
AE6
3
574 597Right-handed alpha
Helix 43
AE7
3
614 622Right-handed alpha
Helix 44
AE8
3
622 633Right-handed alpha
Helix 45
AE9
3
639 664Right-handed alpha
Helix 46
AF1
3
690 702Right-handed alpha
Helix 47
AF2
3
734 757Right-handed alpha
Helix 48
AF3
3
766 783Right-handed alpha
Helix 49
AF4
3
795 827Right-handed alpha
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There are 11 sheets in PDB entry 8JD2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
26 28first strand
Strand 2
2
84 90anti-parallel
Strand 3
2
32 38parallel
Strand 4
2
136 141parallel
Strand 5
2
162 164parallel
Strand 6
2
181 183parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
41 43first strand
Strand 2
2
50 53anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
234 241first strand
Strand 2
2
206 212parallel
Strand 3
2
265 269parallel
Strand 4
2
290 293parallel
Strand 5
2
315 319parallel
Strand 6
2
453 460anti-parallel
Strand 7
2
466 474anti-parallel
Strand 8
2
478 480anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
427 429first strand
Strand 2
2
440 442anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
33 35first strand
Strand 2
3
91 97anti-parallel
Strand 3
3
39 45parallel
Strand 4
3
142 145parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
169 170first strand
Strand 2
3
188 189parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
240 247first strand
Strand 2
3
212 218parallel
Strand 3
3
271 275parallel
Strand 4
3
296 299parallel
Strand 5
3
321 325parallel
Strand 6
3
466 474anti-parallel
Strand 7
3
477 486anti-parallel
Strand 8
3
490 492anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
440 441first strand
Strand 2
3
453 454anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
518 521first strand
Strand 2
3
530 533anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
539 540first strand
Strand 2
3
546 547anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
553 555first strand
Strand 2
3
562 564anti-parallel
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