Analysis of interatomic Contacts of Structural Units in PDB entry:
8JD9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JD9 entry

There are 2 chains in PDB entry 8JD9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 28ASN 1047
B
 LYS 28ASN 1047
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 75 helices in PDB entry 8JD9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 54Right-handed alpha
Helix 2
AA2
A
60 78Right-handed alpha
Helix 3
AA3
A
84 95Right-handed alpha
Helix 4
AA4
A
97 116Right-handed alpha
Helix 5
AA5
A
118 123Right-handed alpha
Helix 6
AA6
A
125 152Right-handed alpha
Helix 7
AA7
A
157 169Right-handed alpha
Helix 8
AA8
A
172 183Right-handed alpha
Helix 9
AA9
A
186 217Right-handed alpha
Helix 10
AB1
A
221 252Right-handed alpha
Helix 11
AB2
A
257 278Right-handed alpha
Helix 12
AB3
A
283 299Right-handed alpha
Helix 13
AB4
A
306 339Right-handed alpha
Helix 14
AB5
A
347 377Right-handed alpha
Helix 15
AB6
A
384 392Right-handed alpha
Helix 16
AB7
A
398 411Right-handed alpha
Helix 17
AB8
A
418 451Right-handed alpha
Helix 18
AB9
A
462 482Right-handed alpha
Helix 19
AC1
A
492 498Right-handed alpha
Helix 20
AC2
A
499 504Right-handed 310
Helix 21
AC3
A
529 549Right-handed alpha
Helix 22
AC4
A
553 570Right-handed alpha
Helix 23
AC5
A
588 596Right-handed 310
Helix 24
AC6
A
600 612Right-handed alpha
Helix 25
AC7
A
613 638Right-handed alpha
Helix 26
AC8
A
640 654Right-handed alpha
Helix 27
AC9
A
654 668Right-handed alpha
Helix 28
AD1
A
668 698Right-handed alpha
Helix 29
AD2
A
702 723Right-handed alpha
Helix 30
AD3
A
733 739Right-handed alpha
Helix 31
AD4
A
750 754Right-handed 310
Helix 32
AD5
A
810 817Right-handed alpha
Helix 33
AD6
A
837 844Right-handed alpha
Helix 34
AD7
A
846 866Right-handed alpha
Helix 35
AD8
A
866 871Right-handed alpha
Helix 36
AD9
A
874 884Right-handed alpha
Helix 37
AE1
A
1012 1017Right-handed alpha
Helix 38
AE2
A
1032 1043Right-handed alpha
Helix 39
AE3
B
34 54Right-handed alpha
Helix 40
AE4
B
60 78Right-handed alpha
Helix 41
AE5
B
84 95Right-handed alpha
Helix 42
AE6
B
97 116Right-handed alpha
Helix 43
AE7
B
118 123Right-handed alpha
Helix 44
AE8
B
125 152Right-handed alpha
Helix 45
AE9
B
157 169Right-handed alpha
Helix 46
AF1
B
172 183Right-handed alpha
Helix 47
AF2
B
186 217Right-handed alpha
Helix 48
AF3
B
221 252Right-handed alpha
Helix 49
AF4
B
257 278Right-handed alpha
Helix 50
AF5
B
283 299Right-handed alpha
Helix 51
AF6
B
304 339Right-handed alpha
Helix 52
AF7
B
347 377Right-handed alpha
Helix 53
AF8
B
384 392Right-handed alpha
Helix 54
AF9
B
398 411Right-handed alpha
Helix 55
AG1
B
418 451Right-handed alpha
Helix 56
AG2
B
462 482Right-handed alpha
Helix 57
AG3
B
492 499Right-handed alpha
Helix 58
AG4
B
500 504Right-handed 310
Helix 59
AG5
B
529 549Right-handed alpha
Helix 60
AG6
B
553 570Right-handed alpha
Helix 61
AG7
B
588 596Right-handed 310
Helix 62
AG8
B
600 638Right-handed alpha
Helix 63
AG9
B
640 654Right-handed alpha
Helix 64
AH1
B
654 668Right-handed alpha
Helix 65
AH2
B
669 698Right-handed alpha
Helix 66
AH3
B
702 723Right-handed alpha
Helix 67
AH4
B
733 739Right-handed alpha
Helix 68
AH5
B
750 754Right-handed 310
Helix 69
AH6
B
810 817Right-handed alpha
Helix 70
AH7
B
837 844Right-handed alpha
Helix 71
AH8
B
846 866Right-handed alpha
Helix 72
AH9
B
866 871Right-handed alpha
Helix 73
AI1
B
874 884Right-handed alpha
Helix 74
AI2
B
1012 1017Right-handed alpha
Helix 75
AI3
B
1032 1043Right-handed alpha
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There are 8 sheets in PDB entry 8JD9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
761 762first strand
Strand 2
A
830 836anti-parallel
Strand 3
A
777 783anti-parallel
Strand 4
A
807 809anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
802 803first strand
Strand 2
A
786 789anti-parallel
Strand 3
A
823 826anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
890 892first strand
Strand 2
A
965 969anti-parallel
Strand 3
A
906 910anti-parallel
Strand 4
A
928 929anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
897 899first strand
Strand 2
A
958 961anti-parallel
Strand 3
A
913 915anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
761 762first strand
Strand 2
B
830 836anti-parallel
Strand 3
B
777 783anti-parallel
Strand 4
B
808 809anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
802 803first strand
Strand 2
B
786 789anti-parallel
Strand 3
B
823 826anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
890 892first strand
Strand 2
B
965 969anti-parallel
Strand 3
B
906 910anti-parallel
Strand 4
B
928 929anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
913 915first strand
Strand 2
B
959 961anti-parallel
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