Analysis of interatomic Contacts of Structural Units in PDB entry:
8JDA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JDA entry

There are 2 chains in PDB entry 8JDA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 30MET 453
B
 GLU 30MET 453
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 8JDA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 54Right-handed alpha
Helix 2
AA2
A
60 77Right-handed alpha
Helix 3
AA3
A
84 95Right-handed alpha
Helix 4
AA4
A
97 116Right-handed alpha
Helix 5
AA5
A
125 138Right-handed alpha
Helix 6
AA6
A
139 152Right-handed alpha
Helix 7
AA7
A
157 169Right-handed alpha
Helix 8
AA8
A
174 181Right-handed alpha
Helix 9
AA9
A
188 204Right-handed alpha
Helix 10
AB1
A
205 217Right-handed alpha
Helix 11
AB2
A
224 232Right-handed alpha
Helix 12
AB3
A
235 254Right-handed alpha
Helix 13
AB4
A
257 278Right-handed alpha
Helix 14
AB5
A
283 298Right-handed alpha
Helix 15
AB6
A
304 339Right-handed alpha
Helix 16
AB7
A
347 352Right-handed alpha
Helix 17
AB8
A
353 378Right-handed alpha
Helix 18
AB9
A
384 392Right-handed alpha
Helix 19
AC1
A
398 410Right-handed alpha
Helix 20
AC2
A
418 451Right-handed alpha
Helix 21
AC3
B
34 54Right-handed alpha
Helix 22
AC4
B
60 77Right-handed alpha
Helix 23
AC5
B
84 93Right-handed alpha
Helix 24
AC6
B
97 105Right-handed alpha
Helix 25
AC7
B
105 110Right-handed alpha
Helix 26
AC8
B
111 116Right-handed alpha
Helix 27
AC9
B
125 138Right-handed alpha
Helix 28
AD1
B
139 152Right-handed alpha
Helix 29
AD2
B
157 168Right-handed alpha
Helix 30
AD3
B
172 183Right-handed alpha
Helix 31
AD4
B
191 204Right-handed alpha
Helix 32
AD5
B
205 218Right-handed alpha
Helix 33
AD6
B
221 232Right-handed alpha
Helix 34
AD7
B
235 254Right-handed alpha
Helix 35
AD8
B
257 281Right-handed alpha
Helix 36
AD9
B
283 299Right-handed alpha
Helix 37
AE1
B
304 339Right-handed alpha
Helix 38
AE2
B
353 377Right-handed alpha
Helix 39
AE3
B
384 392Right-handed alpha
Helix 40
AE4
B
398 411Right-handed alpha
Helix 41
AE5
B
418 439Right-handed alpha
Helix 42
AE6
B
439 451Right-handed alpha
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There are no sheets in PDB entry 8JDA
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