Analysis of interatomic Contacts of Structural Units in PDB entry:
8JDI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JDI entry

There are 8 chains in PDB entry 8JDI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 5	LYS 342
E	ASP 9	GLY 158
C	ILE 5	LYS 342
G	PRO 8	GLY 159
B	ALA 13	GLY 333
F	LYS 7	GLY 158
D	SER 10	PHE 336
H	PRO 8	GLY 158

There are 67 helices in PDB entry 8JDI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	36	Right-handed 310
Helix 2	AA2	A	111	129	Right-handed alpha
Helix 3	AA3	A	131	144	Right-handed alpha
Helix 4	AA4	A	189	205	Right-handed alpha
Helix 5	AA5	A	256	265	Right-handed alpha
Helix 6	AA6	A	274	278	Right-handed 310
Helix 7	AA7	A	303	313	Right-handed alpha
Helix 8	AA8	A	319	333	Right-handed alpha
Helix 9	AA9	E	18	32	Right-handed alpha
Helix 10	AB1	E	34	44	Right-handed alpha
Helix 11	AB2	E	49	66	Right-handed alpha
Helix 12	AB3	E	67	72	Right-handed 310
Helix 13	AB4	E	73	92	Right-handed alpha
Helix 14	AB5	E	95	117	Right-handed alpha
Helix 15	AB6	E	127	132	Right-handed alpha
Helix 16	AB7	E	132	144	Right-handed alpha
Helix 17	AB8	E	145	157	Right-handed alpha
Helix 18	AB9	C	32	36	Right-handed 310
Helix 19	AC1	C	111	130	Right-handed alpha
Helix 20	AC2	C	131	144	Right-handed alpha
Helix 21	AC3	C	145	149	Right-handed 310
Helix 22	AC4	C	178	182	Right-handed alpha
Helix 23	AC5	C	189	205	Right-handed alpha
Helix 24	AC6	C	256	265	Right-handed alpha
Helix 25	AC7	C	303	313	Right-handed alpha
Helix 26	AC8	C	319	333	Right-handed alpha
Helix 27	AC9	G	17	32	Right-handed alpha
Helix 28	AD1	G	34	43	Right-handed alpha
Helix 29	AD2	G	49	66	Right-handed alpha
Helix 30	AD3	G	67	72	Right-handed 310
Helix 31	AD4	G	73	92	Right-handed alpha
Helix 32	AD5	G	95	117	Right-handed alpha
Helix 33	AD6	G	127	132	Right-handed alpha
Helix 34	AD7	G	132	144	Right-handed alpha
Helix 35	AD8	G	145	157	Right-handed alpha
Helix 36	AD9	B	32	36	Right-handed 310
Helix 37	AE1	B	111	129	Right-handed alpha
Helix 38	AE2	B	131	144	Right-handed alpha
Helix 39	AE3	B	189	205	Right-handed alpha
Helix 40	AE4	B	256	265	Right-handed alpha
Helix 41	AE5	B	303	313	Right-handed alpha
Helix 42	AE6	B	319	333	Right-handed alpha
Helix 43	AE7	F	17	32	Right-handed alpha
Helix 44	AE8	F	34	48	Right-handed alpha
Helix 45	AE9	F	49	66	Right-handed alpha
Helix 46	AF1	F	67	72	Right-handed 310
Helix 47	AF2	F	73	92	Right-handed alpha
Helix 48	AF3	F	95	117	Right-handed alpha
Helix 49	AF4	F	127	132	Right-handed alpha
Helix 50	AF5	F	132	144	Right-handed alpha
Helix 51	AF6	F	145	158	Right-handed alpha
Helix 52	AF7	D	29	36	Right-handed 310
Helix 53	AF8	D	112	129	Right-handed alpha
Helix 54	AF9	D	131	144	Right-handed alpha
Helix 55	AG1	D	189	205	Right-handed alpha
Helix 56	AG2	D	256	265	Right-handed alpha
Helix 57	AG3	D	303	314	Right-handed alpha
Helix 58	AG4	D	319	333	Right-handed alpha
Helix 59	AG5	H	18	31	Right-handed alpha
Helix 60	AG6	H	34	45	Right-handed alpha
Helix 61	AG7	H	49	65	Right-handed alpha
Helix 62	AG8	H	66	72	Right-handed 310
Helix 63	AG9	H	73	92	Right-handed alpha
Helix 64	AH1	H	95	116	Right-handed alpha
Helix 65	AH2	H	127	132	Right-handed alpha
Helix 66	AH3	H	132	144	Right-handed alpha
Helix 67	AH4	H	145	157	Right-handed alpha

There are 19 sheets in PDB entry 8JDI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	109	first strand
Strand 2	A	12	13	anti-parallel
Strand 3	A	335	336	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	20	first strand
Strand 2	A	90	99	anti-parallel
Strand 3	A	209	217	anti-parallel
Strand 4	A	158	165	anti-parallel
Strand 5	A	170	177	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	20	first strand
Strand 2	A	90	99	anti-parallel
Strand 3	A	23	28	anti-parallel
Strand 4	A	254	255	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	50	first strand
Strand 2	A	76	82	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	17	first strand
Strand 2	F	9	16	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	14	first strand
Strand 2	C	334	335	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	19	first strand
Strand 2	C	90	99	anti-parallel
Strand 3	C	209	217	anti-parallel
Strand 4	C	158	166	anti-parallel
Strand 5	C	169	177	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	19	first strand
Strand 2	C	90	99	anti-parallel
Strand 3	C	23	28	anti-parallel
Strand 4	C	254	255	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	49	first strand
Strand 2	C	77	83	anti-parallel
Strand 3	C	224	225	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	9	16	first strand
Strand 2	H	10	17	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	19	first strand
Strand 2	B	90	99	anti-parallel
Strand 3	B	209	217	anti-parallel
Strand 4	B	158	166	anti-parallel
Strand 5	B	169	177	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	19	first strand
Strand 2	B	90	99	anti-parallel
Strand 3	B	23	28	anti-parallel
Strand 4	B	254	255	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	50	first strand
Strand 2	B	76	82	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	231	first strand
Strand 2	B	244	246	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	268	first strand
Strand 2	B	280	281	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	13	first strand
Strand 2	D	335	336	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	19	first strand
Strand 2	D	90	99	anti-parallel
Strand 3	D	209	217	anti-parallel
Strand 4	D	158	166	anti-parallel
Strand 5	D	169	177	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	19	first strand
Strand 2	D	90	99	anti-parallel
Strand 3	D	23	28	anti-parallel
Strand 4	D	254	255	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	50	first strand
Strand 2	D	76	83	anti-parallel
Strand 3	D	224	225	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JDI

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JDI