Analysis of interatomic Contacts of Structural Units in PDB entry:
8JDP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JDP entry

There is 1 chain in PDB entry 8JDP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 27LEU 484
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 8JDP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 40Right-handed alpha
Helix 2
AA2
A
47 54Right-handed alpha
Helix 3
AA3
A
74 89Right-handed alpha
Helix 4
AA4
A
127 129Right-handed 310
Helix 5
AA5
A
139 147Right-handed alpha
Helix 6
AA6
A
163 171Right-handed alpha
Helix 7
AA7
A
176 181Right-handed alpha
Helix 8
AA8
A
182 186Right-handed alpha
Helix 9
AA9
A
218 223Right-handed alpha
Helix 10
AB1
A
255 269Right-handed alpha
Helix 11
AB2
A
280 291Right-handed alpha
Helix 12
AB3
A
308 326Right-handed alpha
Helix 13
AB4
A
338 349Right-handed alpha
Helix 14
AB5
A
349 356Right-handed alpha
Helix 15
AB6
A
371 373Right-handed 310
Helix 16
AB7
A
374 389Right-handed alpha
Helix 17
AB8
A
398 402Right-handed 310
Helix 18
AB9
A
414 435Right-handed alpha
Helix 19
AC1
A
449 473Right-handed alpha
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There are 4 sheets in PDB entry 8JDP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 45first strand
Strand 2
A
68 70anti-parallel
Strand 3
A
112 115parallel
Strand 4
A
92 95parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 126first strand
Strand 2
A
131 134anti-parallel
Strand 3
A
231 238anti-parallel
Strand 4
A
187 193anti-parallel
Strand 5
A
199 201anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 153first strand
Strand 2
A
240 241anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 334first strand
Strand 2
A
245 252anti-parallel
Strand 3
A
300 307anti-parallel
Strand 4
A
275 279anti-parallel
Strand 5
A
394 397anti-parallel
Strand 6
A
405 410anti-parallel
Strand 7
A
362 365anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il