Analysis of interatomic Contacts of Structural Units in PDB entry:
8JE1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JE1 entry

There are 4 chains in PDB entry 8JE1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ALA 745
B	MET 1	PRO 97
C	MET 17	CYS 112
D	ASN 113	SER 596

There are120 helices in PDB entry 8JE1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	23	Right-handed alpha
Helix 2	AA2	A	37	39	Right-handed 310
Helix 3	AA3	A	40	47	Right-handed alpha
Helix 4	AA4	A	53	78	Right-handed alpha
Helix 5	AA5	A	82	103	Right-handed alpha
Helix 6	AA6	A	105	111	Right-handed alpha
Helix 7	AA7	A	119	124	Right-handed alpha
Helix 8	AA8	A	147	152	Right-handed alpha
Helix 9	AA9	A	153	156	Right-handed 310
Helix 10	AB1	A	157	174	Right-handed alpha
Helix 11	AB2	A	177	191	Right-handed alpha
Helix 12	AB3	A	200	207	Right-handed alpha
Helix 13	AB4	A	208	228	Right-handed alpha
Helix 14	AB5	A	231	246	Right-handed alpha
Helix 15	AB6	A	255	257	Right-handed 310
Helix 16	AB7	A	258	272	Right-handed alpha
Helix 17	AB8	A	274	280	Right-handed alpha
Helix 18	AB9	A	290	304	Right-handed alpha
Helix 19	AC1	A	308	322	Right-handed alpha
Helix 20	AC2	A	334	356	Right-handed alpha
Helix 21	AC3	A	361	373	Right-handed alpha
Helix 22	AC4	A	387	400	Right-handed alpha
Helix 23	AC5	A	408	423	Right-handed alpha
Helix 24	AC6	A	429	444	Right-handed alpha
Helix 25	AC7	A	450	470	Right-handed alpha
Helix 26	AC8	A	472	492	Right-handed alpha
Helix 27	AC9	A	533	538	Right-handed alpha
Helix 28	AD1	A	540	547	Right-handed alpha
Helix 29	AD2	A	578	589	Right-handed alpha
Helix 30	AD3	A	598	602	Right-handed alpha
Helix 31	AD4	A	606	620	Right-handed alpha
Helix 32	AD5	A	662	691	Right-handed alpha
Helix 33	AD6	A	695	707	Right-handed alpha
Helix 34	AD7	A	714	720	Right-handed alpha
Helix 35	AD8	A	721	728	Right-handed alpha
Helix 36	AD9	B	23	36	Right-handed alpha
Helix 37	AE1	B	45	49	Right-handed 310
Helix 38	AE2	B	56	61	Right-handed alpha
Helix 39	AE3	B	63	67	Right-handed 310
Helix 40	AE4	C	34	37	Right-handed 310
Helix 41	AE5	C	39	45	Right-handed alpha
Helix 42	AE6	C	66	83	Right-handed alpha
Helix 43	AE7	C	99	111	Right-handed alpha
Helix 44	AE8	D	123	132	Right-handed alpha
Helix 45	AE9	D	133	140	Right-handed alpha
Helix 46	AF1	D	156	164	Right-handed alpha
Helix 47	AF2	D	167	176	Right-handed alpha
Helix 48	AF3	D	193	198	Right-handed alpha
Helix 49	AF4	D	199	209	Right-handed alpha
Helix 50	AF5	D	221	229	Right-handed alpha
Helix 51	AF6	D	232	242	Right-handed alpha
Helix 52	AF7	D	245	252	Right-handed alpha
Helix 53	AF8	D	253	262	Right-handed alpha
Helix 54	AF9	D	268	282	Right-handed alpha
Helix 55	AG1	D	312	317	Right-handed alpha
Helix 56	AG2	D	321	337	Right-handed alpha
Helix 57	AG3	D	345	359	Right-handed alpha
Helix 58	AG4	D	362	375	Right-handed alpha
Helix 59	AG5	D	382	398	Right-handed alpha
Helix 60	AG6	D	406	429	Right-handed alpha
Helix 61	AG7	D	433	457	Right-handed alpha
Helix 62	AG8	D	460	476	Right-handed alpha
Helix 63	AG9	D	486	492	Right-handed alpha
Helix 64	AH1	D	511	522	Right-handed alpha
Helix 65	AH2	D	534	540	Right-handed alpha
Helix 66	AH3	D	554	561	Right-handed alpha
Helix 67	AH4	D	582	590	Right-handed alpha
Helix 68	AH5	D	596	608	Right-handed alpha
Helix 69	AH6	D	617	627	Right-handed alpha
Helix 70	AH7	F	10	25	Right-handed alpha
Helix 71	AH8	F	31	38	Right-handed alpha
Helix 72	AH9	F	38	47	Right-handed alpha
Helix 73	AI1	F	54	60	Right-handed alpha
Helix 74	AI2	F	62	73	Right-handed alpha
Helix 75	AI3	F	75	79	Right-handed 310
Helix 76	AI4	F	82	105	Right-handed alpha
Helix 77	AI5	F	105	112	Right-handed alpha
Helix 78	AI6	F	113	117	Right-handed 310
Helix 79	AI7	F	138	151	Right-handed alpha
Helix 80	AI8	F	155	160	Right-handed alpha
Helix 81	AI9	F	162	168	Right-handed alpha
Helix 82	AJ1	F	177	192	Right-handed alpha
Helix 83	AJ2	F	200	207	Right-handed alpha
Helix 84	AJ3	F	207	230	Right-handed alpha
Helix 85	AJ4	F	231	252	Right-handed alpha
Helix 86	AJ5	F	253	254	Right-handed 310
Helix 87	AJ6	F	255	257	Right-handed 310
Helix 88	AJ7	F	258	272	Right-handed alpha
Helix 89	AJ8	F	274	280	Right-handed alpha
Helix 90	AJ9	F	290	304	Right-handed alpha
Helix 91	AK1	F	308	322	Right-handed alpha
Helix 92	AK2	F	334	356	Right-handed alpha
Helix 93	AK3	F	361	373	Right-handed alpha
Helix 94	AK4	F	387	400	Right-handed alpha
Helix 95	AK5	F	413	423	Right-handed alpha
Helix 96	AK6	F	429	444	Right-handed alpha
Helix 97	AK7	F	450	470	Right-handed alpha
Helix 98	AK8	F	472	481	Right-handed alpha
Helix 99	AK9	G	23	36	Right-handed alpha
Helix 100	AL1	H	33	38	Right-handed alpha
Helix 101	AL2	H	43	47	Right-handed 310
Helix 102	AL3	H	66	83	Right-handed alpha
Helix 103	AL4	H	99	108	Right-handed alpha
Helix 104	AL5	I	383	399	Right-handed alpha
Helix 105	AL6	I	407	414	Right-handed alpha
Helix 106	AL7	I	417	429	Right-handed alpha
Helix 107	AL8	I	430	434	Right-handed 310
Helix 108	AL9	I	436	455	Right-handed alpha
Helix 109	AM1	I	461	472	Right-handed alpha
Helix 110	AM2	I	473	475	Right-handed 310
Helix 111	AM3	I	481	485	Right-handed 310
Helix 112	AM4	I	486	493	Right-handed alpha
Helix 113	AM5	I	512	522	Right-handed alpha
Helix 114	AM6	I	529	533	Right-handed 310
Helix 115	AM7	I	534	540	Right-handed alpha
Helix 116	AM8	I	548	563	Right-handed alpha
Helix 117	AM9	I	575	580	Right-handed alpha
Helix 118	AN1	I	586	591	Right-handed alpha
Helix 119	AN2	I	596	608	Right-handed alpha
Helix 120	AN3	I	617	624	Right-handed 310

There are 4 sheets in PDB entry 8JE1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	508	512	first strand
Strand 2	R	26	32	parallel
Strand 3	A	561	563	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	9	first strand
Strand 2	B	12	16	anti-parallel
Strand 3	C	28	32	parallel
Strand 4	C	18	22	anti-parallel
Strand 5	C	59	61	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	7	9	first strand
Strand 2	G	12	14	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	29	31	first strand
Strand 2	H	19	23	anti-parallel
Strand 3	H	61	62	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JE1

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JE1