Analysis of interatomic Contacts of Structural Units in PDB entry:
8JE2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JE2 entry

There are 5 chains in PDB entry 8JE2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 463
B
 MET 1PRO 97
C
 MET 17CYS 112
D
 ASN 121HIS 627
H
 LEU 568LEU 590
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 57 helices in PDB entry 8JE2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 26Right-handed alpha
Helix 2
AA2
A
31 47Right-handed alpha
Helix 3
AA3
A
53 79Right-handed alpha
Helix 4
AA4
A
82 105Right-handed alpha
Helix 5
AA5
A
105 111Right-handed alpha
Helix 6
AA6
A
119 125Right-handed alpha
Helix 7
AA7
A
138 151Right-handed alpha
Helix 8
AA8
A
152 154Right-handed 310
Helix 9
AA9
A
155 173Right-handed alpha
Helix 10
AB1
A
177 191Right-handed alpha
Helix 11
AB2
A
200 207Right-handed alpha
Helix 12
AB3
A
207 230Right-handed alpha
Helix 13
AB4
A
231 253Right-handed alpha
Helix 14
AB5
A
255 257Right-handed 310
Helix 15
AB6
A
258 271Right-handed alpha
Helix 16
AB7
A
274 288Right-handed alpha
Helix 17
AB8
A
290 302Right-handed alpha
Helix 18
AB9
A
306 330Right-handed alpha
Helix 19
AC1
A
335 358Right-handed alpha
Helix 20
AC2
A
361 375Right-handed alpha
Helix 21
AC3
A
385 400Right-handed alpha
Helix 22
AC4
A
407 425Right-handed alpha
Helix 23
AC5
A
428 446Right-handed alpha
Helix 24
AC6
A
450 463Right-handed alpha
Helix 25
AC7
B
23 36Right-handed alpha
Helix 26
AC8
C
33 37Right-handed alpha
Helix 27
AC9
C
39 47Right-handed alpha
Helix 28
AD1
C
66 82Right-handed alpha
Helix 29
AD2
C
96 111Right-handed alpha
Helix 30
AD3
D
123 132Right-handed alpha
Helix 31
AD4
D
133 143Right-handed alpha
Helix 32
AD5
D
156 165Right-handed alpha
Helix 33
AD6
D
166 176Right-handed alpha
Helix 34
AD7
D
189 197Right-handed alpha
Helix 35
AD8
D
199 209Right-handed alpha
Helix 36
AD9
D
221 229Right-handed alpha
Helix 37
AE1
D
231 241Right-handed alpha
Helix 38
AE2
D
245 263Right-handed alpha
Helix 39
AE3
D
268 284Right-handed alpha
Helix 40
AE4
D
310 318Right-handed alpha
Helix 41
AE5
D
320 338Right-handed alpha
Helix 42
AE6
D
343 357Right-handed alpha
Helix 43
AE7
D
359 378Right-handed alpha
Helix 44
AE8
D
381 398Right-handed alpha
Helix 45
AE9
D
404 429Right-handed alpha
Helix 46
AF1
D
430 432Right-handed 310
Helix 47
AF2
D
433 457Right-handed alpha
Helix 48
AF3
D
460 477Right-handed alpha
Helix 49
AF4
D
481 485Right-handed 310
Helix 50
AF5
D
486 493Right-handed alpha
Helix 51
AF6
D
511 521Right-handed alpha
Helix 52
AF7
D
534 541Right-handed alpha
Helix 53
AF8
D
548 561Right-handed alpha
Helix 54
AF9
D
575 580Right-handed alpha
Helix 55
AG1
D
582 593Right-handed alpha
Helix 56
AG2
D
596 609Right-handed alpha
Helix 57
AG3
D
617 627Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 8JE2.

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 50first strand
Strand 2
B
43 46anti-parallel
Strand 3
B
73 78anti-parallel
Strand 4
B
5 9parallel
Strand 5
B
12 15anti-parallel
Strand 6
C
28 32parallel
Strand 7
C
18 22anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il