Analysis of interatomic Contacts of Structural Units in PDB entry:
8JE4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JE4 entry

There are 2 chains in PDB entry 8JE4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 7ASN 301
B
 SER 7GLN 300
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 8JE4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 30Right-handed alpha
Helix 2
AA2
A
37 46Right-handed alpha
Helix 3
AA3
A
77 93Right-handed alpha
Helix 4
AA4
A
102 110Right-handed alpha
Helix 5
AA5
A
114 116Right-handed 310
Helix 6
AA6
A
145 157Right-handed alpha
Helix 7
AA7
A
159 164Right-handed alpha
Helix 8
AA8
A
193 197Right-handed alpha
Helix 9
AA9
A
198 209Right-handed alpha
Helix 10
AB1
A
210 215Right-handed alpha
Helix 11
AB2
A
216 218Right-handed 310
Helix 12
AB3
A
242 249Right-handed 310
Helix 13
AB4
A
253 264Right-handed alpha
Helix 14
AB5
A
278 282Right-handed alpha
Helix 15
AB6
B
15 30Right-handed alpha
Helix 16
AB7
B
37 47Right-handed alpha
Helix 17
AB8
B
77 94Right-handed alpha
Helix 18
AB9
B
102 109Right-handed alpha
Helix 19
AC1
B
114 116Right-handed 310
Helix 20
AC2
B
130 133Right-handed 310
Helix 21
AC3
B
145 156Right-handed alpha
Helix 22
AC4
B
159 164Right-handed alpha
Helix 23
AC5
B
193 197Right-handed alpha
Helix 24
AC6
B
198 209Right-handed alpha
Helix 25
AC7
B
210 215Right-handed alpha
Helix 26
AC8
B
216 218Right-handed 310
Helix 27
AC9
B
242 244Right-handed 310
Helix 28
AD1
B
245 250Right-handed alpha
Helix 29
AD2
B
253 265Right-handed alpha
Helix 30
AD3
B
278 282Right-handed alpha
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There are 2 sheets in PDB entry 8JE4. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 187first strand
Strand 2
A
170 178anti-parallel
Strand 3
A
135 143anti-parallel
Strand 4
A
118 126anti-parallel
Strand 5
A
63 73anti-parallel
Strand 6
A
51 60anti-parallel
Strand 7
A
288 297anti-parallel
Strand 8
A
272 277anti-parallel
Strand 9
A
235 240anti-parallel
Strand 10
A
220 226anti-parallel
Strand 11
A
190 192anti-parallel
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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
183 187first strand
Strand 2
B
171 178anti-parallel
Strand 3
B
135 142anti-parallel
Strand 4
B
118 126anti-parallel
Strand 5
B
63 73anti-parallel
Strand 6
B
51 60anti-parallel
Strand 7
B
288 297anti-parallel
Strand 8
B
272 277anti-parallel
Strand 9
B
235 240anti-parallel
Strand 10
B
220 226anti-parallel
Strand 11
B
190 192anti-parallel
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