Analysis of interatomic Contacts of Structural Units in PDB entry:
8JE5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JE5 entry

There are 2 chains in PDB entry 8JE5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 1220	TYR 1722
B	LEU 1223	TYR 1722

There are 30 helices in PDB entry 8JE5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1230	1242	Right-handed alpha
Helix 2	AA2	A	1257	1279	Right-handed alpha
Helix 3	AA3	A	1290	1296	Right-handed alpha
Helix 4	AA4	A	1304	1307	Right-handed 310
Helix 5	AA5	A	1329	1341	Right-handed alpha
Helix 6	AA6	A	1343	1347	Right-handed 310
Helix 7	AA7	A	1385	1407	Right-handed alpha
Helix 8	AA8	A	1453	1460	Right-handed alpha
Helix 9	AA9	A	1483	1494	Right-handed alpha
Helix 10	AB1	A	1522	1543	Right-handed alpha
Helix 11	AB2	A	1556	1568	Right-handed alpha
Helix 12	AB3	A	1576	1582	Right-handed alpha
Helix 13	AB4	A	1602	1629	Right-handed alpha
Helix 14	AB5	A	1635	1645	Right-handed alpha
Helix 15	AB6	A	1656	1666	Right-handed alpha
Helix 16	AB7	B	1230	1242	Right-handed alpha
Helix 17	AB8	B	1257	1279	Right-handed alpha
Helix 18	AB9	B	1291	1295	Right-handed alpha
Helix 19	AC1	B	1304	1307	Right-handed 310
Helix 20	AC2	B	1329	1341	Right-handed alpha
Helix 21	AC3	B	1343	1347	Right-handed 310
Helix 22	AC4	B	1385	1407	Right-handed alpha
Helix 23	AC5	B	1453	1460	Right-handed alpha
Helix 24	AC6	B	1483	1494	Right-handed alpha
Helix 25	AC7	B	1523	1543	Right-handed alpha
Helix 26	AC8	B	1556	1567	Right-handed alpha
Helix 27	AC9	B	1576	1582	Right-handed alpha
Helix 28	AD1	B	1602	1629	Right-handed alpha
Helix 29	AD2	B	1635	1645	Right-handed alpha
Helix 30	AD3	B	1656	1666	Right-handed alpha

There are 10 sheets in PDB entry 8JE5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1245	1246	first strand
Strand 2	A	1255	1256	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1281	1282	first strand
Strand 2	A	1349	1358	parallel
Strand 3	A	1373	1383	anti-parallel
Strand 4	A	1475	1482	anti-parallel
Strand 5	A	1441	1452	anti-parallel
Strand 6	A	1428	1436	anti-parallel
Strand 7	A	1413	1416	anti-parallel
Strand 8	A	1688	1689	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1288	1289	first strand
Strand 2	A	1317	1325	anti-parallel
Strand 3	A	1309	1314	anti-parallel
Strand 4	B	1309	1314	anti-parallel
Strand 5	B	1317	1325	anti-parallel
Strand 6	B	1288	1290	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1462	1464	first strand
Strand 2	A	1471	1473	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1547	1549	first strand
Strand 2	A	1510	1514	parallel
Strand 3	A	1571	1575	parallel
Strand 4	A	1584	1589	anti-parallel
Strand 5	A	1595	1599	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1630	1632	first strand
Strand 2	A	1648	1653	parallel
Strand 3	A	1714	1719	anti-parallel
Strand 4	A	1684	1685	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1245	1246	first strand
Strand 2	B	1255	1256	anti-parallel

Back to list of sheets
Back to top of page

There are 11 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1281	1282	first strand
Strand 2	B	1349	1358	parallel
Strand 3	B	1373	1383	anti-parallel
Strand 4	B	1475	1482	anti-parallel
Strand 5	B	1441	1452	anti-parallel
Strand 6	B	1428	1436	anti-parallel
Strand 7	B	1413	1416	anti-parallel
Strand 8	B	1684	1689	anti-parallel
Strand 9	B	1714	1719	anti-parallel
Strand 10	B	1648	1653	anti-parallel
Strand 11	B	1630	1632	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1462	1464	first strand
Strand 2	B	1471	1473	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1547	1549	first strand
Strand 2	B	1510	1514	parallel
Strand 3	B	1571	1575	parallel
Strand 4	B	1584	1589	anti-parallel
Strand 5	B	1595	1599	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JE5

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JE5