Analysis of interatomic Contacts of Structural Units in PDB entry:
8JE7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JE7 entry

There are 2 chains in PDB entry 8JE7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 1222	TYR 1722
B	GLY 1222	TYR 1722

There are 29 helices in PDB entry 8JE7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1230	1242	Right-handed alpha
Helix 2	AA2	A	1257	1278	Right-handed alpha
Helix 3	AA3	A	1291	1297	Right-handed alpha
Helix 4	AA4	A	1329	1341	Right-handed alpha
Helix 5	AA5	A	1343	1347	Right-handed 310
Helix 6	AA6	A	1385	1406	Right-handed alpha
Helix 7	AA7	A	1453	1460	Right-handed alpha
Helix 8	AA8	A	1483	1494	Right-handed alpha
Helix 9	AA9	A	1522	1543	Right-handed alpha
Helix 10	AB1	A	1556	1568	Right-handed alpha
Helix 11	AB2	A	1576	1582	Right-handed alpha
Helix 12	AB3	A	1602	1629	Right-handed alpha
Helix 13	AB4	A	1635	1645	Right-handed alpha
Helix 14	AB5	A	1656	1666	Right-handed alpha
Helix 15	AB6	B	1230	1242	Right-handed alpha
Helix 16	AB7	B	1257	1279	Right-handed alpha
Helix 17	AB8	B	1291	1295	Right-handed alpha
Helix 18	AB9	B	1300	1305	Right-handed 310
Helix 19	AC1	B	1329	1341	Right-handed alpha
Helix 20	AC2	B	1343	1347	Right-handed 310
Helix 21	AC3	B	1385	1407	Right-handed alpha
Helix 22	AC4	B	1453	1460	Right-handed alpha
Helix 23	AC5	B	1483	1494	Right-handed alpha
Helix 24	AC6	B	1525	1543	Right-handed alpha
Helix 25	AC7	B	1556	1567	Right-handed alpha
Helix 26	AC8	B	1576	1582	Right-handed alpha
Helix 27	AC9	B	1602	1629	Right-handed alpha
Helix 28	AD1	B	1635	1645	Right-handed alpha
Helix 29	AD2	B	1656	1667	Right-handed alpha

There are 9 sheets in PDB entry 8JE7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1245	1246	first strand
Strand 2	A	1255	1256	anti-parallel

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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1281	1282	first strand
Strand 2	A	1349	1358	parallel
Strand 3	A	1373	1383	anti-parallel
Strand 4	A	1475	1482	anti-parallel
Strand 5	A	1442	1452	anti-parallel
Strand 6	A	1428	1435	anti-parallel
Strand 7	A	1413	1416	anti-parallel
Strand 8	A	1684	1689	anti-parallel
Strand 9	A	1714	1719	anti-parallel
Strand 10	A	1648	1653	anti-parallel
Strand 11	A	1630	1632	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1288	1290	first strand
Strand 2	A	1317	1325	anti-parallel
Strand 3	A	1309	1314	anti-parallel
Strand 4	B	1309	1314	anti-parallel
Strand 5	B	1317	1325	anti-parallel
Strand 6	B	1288	1290	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1462	1464	first strand
Strand 2	A	1471	1473	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1547	1549	first strand
Strand 2	A	1510	1514	parallel
Strand 3	A	1571	1575	parallel
Strand 4	A	1584	1589	anti-parallel
Strand 5	A	1595	1599	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1245	1246	first strand
Strand 2	B	1255	1256	anti-parallel

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There are 11 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1281	1282	first strand
Strand 2	B	1349	1358	parallel
Strand 3	B	1373	1383	anti-parallel
Strand 4	B	1475	1482	anti-parallel
Strand 5	B	1441	1452	anti-parallel
Strand 6	B	1428	1436	anti-parallel
Strand 7	B	1413	1416	anti-parallel
Strand 8	B	1684	1689	anti-parallel
Strand 9	B	1714	1719	anti-parallel
Strand 10	B	1648	1653	anti-parallel
Strand 11	B	1630	1632	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1462	1464	first strand
Strand 2	B	1471	1473	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1547	1549	first strand
Strand 2	B	1510	1514	parallel
Strand 3	B	1571	1575	parallel
Strand 4	B	1584	1589	anti-parallel
Strand 5	B	1595	1599	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JE7

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JE7