Analysis of interatomic Contacts of Structural Units in PDB entry:
8JEC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JEC entry

There are 4 chains in PDB entry 8JEC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 75	SER 740
B	ILE 74	SER 740
C	VAL 75	SER 740
D	ILE 74	SER 740

There are136 helices in PDB entry 8JEC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	81	107	Right-handed alpha
Helix 2	AA2	A	111	113	Right-handed 310
Helix 3	AA3	A	114	132	Right-handed alpha
Helix 4	AA4	A	133	135	Right-handed 310
Helix 5	AA5	A	150	169	Right-handed alpha
Helix 6	AA6	A	170	178	Right-handed alpha
Helix 7	AA7	A	183	194	Right-handed 310
Helix 8	AA8	A	195	208	Right-handed alpha
Helix 9	AA9	A	213	243	Right-handed alpha
Helix 10	AB1	A	244	251	Right-handed 310
Helix 11	AB2	A	272	287	Right-handed alpha
Helix 12	AB3	A	298	329	Right-handed alpha
Helix 13	AB4	A	331	350	Right-handed alpha
Helix 14	AB5	A	353	371	Right-handed alpha
Helix 15	AB6	A	383	394	Right-handed alpha
Helix 16	AB7	A	394	400	Right-handed alpha
Helix 17	AB8	A	408	417	Right-handed alpha
Helix 18	AB9	A	472	478	Right-handed alpha
Helix 19	AC1	A	499	509	Right-handed alpha
Helix 20	AC2	A	509	523	Right-handed alpha
Helix 21	AC3	A	530	559	Right-handed alpha
Helix 22	AC4	A	560	570	Right-handed alpha
Helix 23	AC5	A	583	592	Right-handed alpha
Helix 24	AC6	A	593	603	Right-handed alpha
Helix 25	AC7	A	616	625	Right-handed alpha
Helix 26	AC8	A	626	637	Right-handed alpha
Helix 27	AC9	A	644	656	Right-handed alpha
Helix 28	AD1	A	658	666	Right-handed alpha
Helix 29	AD2	A	680	689	Right-handed alpha
Helix 30	AD3	A	690	699	Right-handed alpha
Helix 31	AD4	A	713	722	Right-handed alpha
Helix 32	AD5	A	723	740	Right-handed alpha
Helix 33	AD6	B	79	106	Right-handed alpha
Helix 34	AD7	B	111	113	Right-handed 310
Helix 35	AD8	B	114	132	Right-handed alpha
Helix 36	AD9	B	133	135	Right-handed 310
Helix 37	AE1	B	148	158	Right-handed alpha
Helix 38	AE2	B	160	169	Right-handed alpha
Helix 39	AE3	B	170	178	Right-handed alpha
Helix 40	AE4	B	182	194	Right-handed 310
Helix 41	AE5	B	195	207	Right-handed alpha
Helix 42	AE6	B	212	243	Right-handed alpha
Helix 43	AE7	B	244	251	Right-handed 310
Helix 44	AE8	B	272	287	Right-handed alpha
Helix 45	AE9	B	298	329	Right-handed alpha
Helix 46	AF1	B	331	351	Right-handed alpha
Helix 47	AF2	B	355	370	Right-handed alpha
Helix 48	AF3	B	382	394	Right-handed alpha
Helix 49	AF4	B	395	398	Right-handed 310
Helix 50	AF5	B	401	405	Right-handed 310
Helix 51	AF6	B	408	418	Right-handed alpha
Helix 52	AF7	B	473	478	Right-handed alpha
Helix 53	AF8	B	499	509	Right-handed alpha
Helix 54	AF9	B	509	522	Right-handed alpha
Helix 55	AG1	B	528	533	Right-handed alpha
Helix 56	AG2	B	533	558	Right-handed alpha
Helix 57	AG3	B	560	570	Right-handed alpha
Helix 58	AG4	B	583	591	Right-handed alpha
Helix 59	AG5	B	593	603	Right-handed alpha
Helix 60	AG6	B	616	624	Right-handed alpha
Helix 61	AG7	B	626	636	Right-handed alpha
Helix 62	AG8	B	644	656	Right-handed alpha
Helix 63	AG9	B	657	665	Right-handed alpha
Helix 64	AH1	B	666	668	Right-handed 310
Helix 65	AH2	B	680	689	Right-handed alpha
Helix 66	AH3	B	691	700	Right-handed alpha
Helix 67	AH4	B	713	722	Right-handed alpha
Helix 68	AH5	B	723	740	Right-handed alpha
Helix 69	AH6	C	81	107	Right-handed alpha
Helix 70	AH7	C	111	113	Right-handed 310
Helix 71	AH8	C	114	132	Right-handed alpha
Helix 72	AH9	C	133	135	Right-handed 310
Helix 73	AI1	C	150	169	Right-handed alpha
Helix 74	AI2	C	170	178	Right-handed alpha
Helix 75	AI3	C	183	194	Right-handed 310
Helix 76	AI4	C	195	208	Right-handed alpha
Helix 77	AI5	C	212	243	Right-handed alpha
Helix 78	AI6	C	244	251	Right-handed 310
Helix 79	AI7	C	272	287	Right-handed alpha
Helix 80	AI8	C	298	329	Right-handed alpha
Helix 81	AI9	C	331	350	Right-handed alpha
Helix 82	AJ1	C	353	371	Right-handed alpha
Helix 83	AJ2	C	383	394	Right-handed alpha
Helix 84	AJ3	C	394	400	Right-handed alpha
Helix 85	AJ4	C	401	405	Right-handed 310
Helix 86	AJ5	C	408	417	Right-handed alpha
Helix 87	AJ6	C	473	479	Right-handed alpha
Helix 88	AJ7	C	498	509	Right-handed alpha
Helix 89	AJ8	C	509	523	Right-handed alpha
Helix 90	AJ9	C	530	559	Right-handed alpha
Helix 91	AK1	C	560	570	Right-handed alpha
Helix 92	AK2	C	583	592	Right-handed alpha
Helix 93	AK3	C	593	601	Right-handed alpha
Helix 94	AK4	C	616	624	Right-handed alpha
Helix 95	AK5	C	626	637	Right-handed alpha
Helix 96	AK6	C	644	656	Right-handed alpha
Helix 97	AK7	C	658	666	Right-handed alpha
Helix 98	AK8	C	680	689	Right-handed alpha
Helix 99	AK9	C	691	700	Right-handed alpha
Helix 100	AL1	C	713	722	Right-handed alpha
Helix 101	AL2	C	723	740	Right-handed alpha
Helix 102	AL3	D	79	106	Right-handed alpha
Helix 103	AL4	D	111	113	Right-handed 310
Helix 104	AL5	D	114	132	Right-handed alpha
Helix 105	AL6	D	133	135	Right-handed 310
Helix 106	AL7	D	149	158	Right-handed alpha
Helix 107	AL8	D	160	169	Right-handed alpha
Helix 108	AL9	D	170	178	Right-handed alpha
Helix 109	AM1	D	182	194	Right-handed 310
Helix 110	AM2	D	195	207	Right-handed alpha
Helix 111	AM3	D	212	243	Right-handed alpha
Helix 112	AM4	D	244	251	Right-handed 310
Helix 113	AM5	D	272	287	Right-handed alpha
Helix 114	AM6	D	298	330	Right-handed alpha
Helix 115	AM7	D	333	351	Right-handed alpha
Helix 116	AM8	D	355	370	Right-handed alpha
Helix 117	AM9	D	382	394	Right-handed alpha
Helix 118	AN1	D	395	398	Right-handed 310
Helix 119	AN2	D	401	405	Right-handed 310
Helix 120	AN3	D	408	418	Right-handed alpha
Helix 121	AN4	D	472	479	Right-handed alpha
Helix 122	AN5	D	499	509	Right-handed alpha
Helix 123	AN6	D	509	522	Right-handed alpha
Helix 124	AN7	D	528	533	Right-handed alpha
Helix 125	AN8	D	533	558	Right-handed alpha
Helix 126	AN9	D	560	570	Right-handed alpha
Helix 127	AO1	D	583	591	Right-handed alpha
Helix 128	AO2	D	593	603	Right-handed alpha
Helix 129	AO3	D	616	624	Right-handed alpha
Helix 130	AO4	D	626	636	Right-handed alpha
Helix 131	AO5	D	644	656	Right-handed alpha
Helix 132	AO6	D	657	667	Right-handed alpha
Helix 133	AO7	D	680	689	Right-handed alpha
Helix 134	AO8	D	691	700	Right-handed alpha
Helix 135	AO9	D	713	722	Right-handed alpha
Helix 136	AP1	D	723	740	Right-handed alpha

There are 8 sheets in PDB entry 8JEC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	420	424	first strand
Strand 2	A	492	498	anti-parallel
Strand 3	A	439	443	anti-parallel
Strand 4	A	470	471	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	463	465	first strand
Strand 2	A	448	451	anti-parallel
Strand 3	A	485	488	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	420	424	first strand
Strand 2	B	492	498	anti-parallel
Strand 3	B	439	443	anti-parallel
Strand 4	B	470	471	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	429	431	first strand
Strand 2	B	485	488	anti-parallel
Strand 3	B	448	452	anti-parallel
Strand 4	B	460	465	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	420	424	first strand
Strand 2	C	492	497	anti-parallel
Strand 3	C	440	443	anti-parallel
Strand 4	C	469	471	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	463	465	first strand
Strand 2	C	448	451	anti-parallel
Strand 3	C	485	488	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	420	424	first strand
Strand 2	D	492	498	anti-parallel
Strand 3	D	439	443	anti-parallel
Strand 4	D	470	471	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	429	431	first strand
Strand 2	D	485	488	anti-parallel
Strand 3	D	448	452	anti-parallel
Strand 4	D	460	465	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JEC

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JEC