Analysis of interatomic Contacts of Structural Units in PDB entry:
8JED


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JED entry

There is 1 chain in PDB entry 8JED (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLY 0HIS 295
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 8JED. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
0 11Right-handed alpha
Helix 2
AA2
B
42 47Right-handed alpha
Helix 3
AA3
B
47 56Right-handed alpha
Helix 4
AA4
B
57 65Right-handed alpha
Helix 5
AA5
B
73 82Right-handed alpha
Helix 6
AA6
B
132 136Right-handed 310
Helix 7
AA7
B
137 145Right-handed 310
Helix 8
AA8
B
162 175Right-handed alpha
Helix 9
AA9
B
202 218Right-handed alpha
Helix 10
AB1
B
223 227Right-handed 310
Helix 11
AB2
B
238 268Right-handed alpha
Helix 12
AB3
B
276 288Right-handed alpha
Helix 13
AB4
B
290 294Right-handed 310
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There are 2 sheets in PDB entry 8JED. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 16first strand
Strand 2
B
176 183anti-parallel
Strand 3
B
194 201anti-parallel
Strand 4
B
152 157anti-parallel
Strand 5
B
98 102parallel
Strand 6
B
87 88parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 29first strand
Strand 2
B
230 233anti-parallel
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