Analysis of interatomic Contacts of Structural Units in PDB entry:
8JEM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JEM entry

There are 4 chains in PDB entry 8JEM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -1LYS 415
B
 PHE -3LYS 415
C
 PHE -3LYS 415
D
 PHE -3LYS 415
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 79 helices in PDB entry 8JEM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 8Right-handed alpha
Helix 2
AA2
A
16 36Right-handed alpha
Helix 3
AA3
A
40 57Right-handed alpha
Helix 4
AA4
A
62 86Right-handed alpha
Helix 5
AA5
A
92 115Right-handed alpha
Helix 6
AA6
A
125 142Right-handed alpha
Helix 7
AA7
A
149 158Right-handed alpha
Helix 8
AA8
A
170 180Right-handed alpha
Helix 9
AA9
A
183 207Right-handed alpha
Helix 10
AB1
A
207 215Right-handed alpha
Helix 11
AB2
A
216 228Right-handed alpha
Helix 12
AB3
A
232 263Right-handed alpha
Helix 13
AB4
A
274 278Right-handed 310
Helix 14
AB5
A
289 300Right-handed alpha
Helix 15
AB6
A
300 311Right-handed alpha
Helix 16
AB7
A
316 337Right-handed alpha
Helix 17
AB8
A
339 374Right-handed alpha
Helix 18
AB9
A
382 404Right-handed alpha
Helix 19
AC1
A
405 411Right-handed alpha
Helix 20
AC2
B
0 7Right-handed alpha
Helix 21
AC3
B
18 36Right-handed alpha
Helix 22
AC4
B
40 57Right-handed alpha
Helix 23
AC5
B
62 88Right-handed alpha
Helix 24
AC6
B
90 115Right-handed alpha
Helix 25
AC7
B
129 142Right-handed alpha
Helix 26
AC8
B
149 158Right-handed alpha
Helix 27
AC9
B
170 180Right-handed alpha
Helix 28
AD1
B
183 207Right-handed alpha
Helix 29
AD2
B
207 215Right-handed alpha
Helix 30
AD3
B
216 228Right-handed alpha
Helix 31
AD4
B
232 264Right-handed alpha
Helix 32
AD5
B
274 278Right-handed 310
Helix 33
AD6
B
281 286Right-handed alpha
Helix 34
AD7
B
289 300Right-handed alpha
Helix 35
AD8
B
300 311Right-handed alpha
Helix 36
AD9
B
316 337Right-handed alpha
Helix 37
AE1
B
339 373Right-handed alpha
Helix 38
AE2
B
381 405Right-handed alpha
Helix 39
AE3
B
405 411Right-handed alpha
Helix 40
AE4
C
0 8Right-handed alpha
Helix 41
AE5
C
17 36Right-handed alpha
Helix 42
AE6
C
40 57Right-handed alpha
Helix 43
AE7
C
62 88Right-handed alpha
Helix 44
AE8
C
90 115Right-handed alpha
Helix 45
AE9
C
125 142Right-handed alpha
Helix 46
AF1
C
149 158Right-handed alpha
Helix 47
AF2
C
159 163Right-handed 310
Helix 48
AF3
C
170 180Right-handed alpha
Helix 49
AF4
C
183 207Right-handed alpha
Helix 50
AF5
C
207 215Right-handed alpha
Helix 51
AF6
C
216 228Right-handed alpha
Helix 52
AF7
C
232 263Right-handed alpha
Helix 53
AF8
C
280 285Right-handed alpha
Helix 54
AF9
C
289 300Right-handed alpha
Helix 55
AG1
C
300 312Right-handed alpha
Helix 56
AG2
C
316 337Right-handed alpha
Helix 57
AG3
C
339 374Right-handed alpha
Helix 58
AG4
C
381 404Right-handed alpha
Helix 59
AG5
C
405 412Right-handed alpha
Helix 60
AG6
D
0 6Right-handed alpha
Helix 61
AG7
D
18 36Right-handed alpha
Helix 62
AG8
D
40 57Right-handed alpha
Helix 63
AG9
D
62 88Right-handed alpha
Helix 64
AH1
D
90 115Right-handed alpha
Helix 65
AH2
D
125 128Right-handed 310
Helix 66
AH3
D
129 142Right-handed alpha
Helix 67
AH4
D
149 158Right-handed alpha
Helix 68
AH5
D
170 180Right-handed alpha
Helix 69
AH6
D
183 207Right-handed alpha
Helix 70
AH7
D
207 215Right-handed alpha
Helix 71
AH8
D
216 228Right-handed alpha
Helix 72
AH9
D
232 264Right-handed alpha
Helix 73
AI1
D
280 285Right-handed alpha
Helix 74
AI2
D
289 300Right-handed alpha
Helix 75
AI3
D
300 312Right-handed alpha
Helix 76
AI4
D
316 337Right-handed alpha
Helix 77
AI5
D
339 373Right-handed alpha
Helix 78
AI6
D
381 405Right-handed alpha
Helix 79
AI7
D
405 411Right-handed alpha
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There are no sheets in PDB entry 8JEM
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