Analysis of interatomic Contacts of Structural Units in PDB entry:
8JEO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JEO entry

There are 6 chains in PDB entry 8JEO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 23GLU 128
B
 GLU 1CYS 229
C
 ASP 1CYS 220
D
 MET 22GLU 128
E
 GLU 1PRO 226
F
 ASP 1GLY 218
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8JEO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
99 103Right-handed 310
Helix 2
AA2
B
65 68Right-handed 310
Helix 3
AA3
B
90 94Right-handed 310
Helix 4
AA4
B
169 171Right-handed 310
Helix 5
AA5
B
200 202Right-handed 310
Helix 6
AA6
B
214 217Right-handed 310
Helix 7
AA7
C
85 89Right-handed 310
Helix 8
AA8
C
127 133Right-handed alpha
Helix 9
AA9
C
189 194Right-handed alpha
Helix 10
AB1
D
99 103Right-handed 310
Helix 11
AB2
E
65 68Right-handed 310
Helix 12
AB3
E
90 94Right-handed 310
Helix 13
AB4
E
169 171Right-handed 310
Helix 14
AB5
E
200 202Right-handed 310
Helix 15
AB6
E
214 217Right-handed 310
Helix 16
AB7
F
85 89Right-handed 310
Helix 17
AB8
F
127 132Right-handed alpha
Helix 18
AB9
F
189 194Right-handed alpha
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There are 30 sheets in PDB entry 8JEO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 29first strand
Strand 2
A
41 48anti-parallel
Strand 3
A
92 95anti-parallel
Strand 4
A
85 87anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 35first strand
Strand 2
A
117 126parallel
Strand 3
A
104 113anti-parallel
Strand 4
A
53 61anti-parallel
Strand 5
A
64 70anti-parallel
Strand 6
A
74 77anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
18 25anti-parallel
Strand 3
B
81 86anti-parallel
Strand 4
B
71 72anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
18 25anti-parallel
Strand 3
B
81 86anti-parallel
Strand 4
B
75 76anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 12first strand
Strand 2
B
120 124parallel
Strand 3
B
95 103anti-parallel
Strand 4
B
34 42anti-parallel
Strand 5
B
46 55anti-parallel
Strand 6
B
59 63anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 12first strand
Strand 2
B
120 124parallel
Strand 3
B
95 103anti-parallel
Strand 4
B
113 116anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 137first strand
Strand 2
B
148 158anti-parallel
Strand 3
B
189 198anti-parallel
Strand 4
B
176 178anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 137first strand
Strand 2
B
148 158anti-parallel
Strand 3
B
189 198anti-parallel
Strand 4
B
182 183anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
164 167first strand
Strand 2
B
208 213anti-parallel
Strand 3
B
218 223anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 7first strand
Strand 2
C
19 25anti-parallel
Strand 3
C
76 81anti-parallel
Strand 4
C
68 72anti-parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 14first strand
Strand 2
C
108 113parallel
Strand 3
C
90 96anti-parallel
Strand 4
C
39 44anti-parallel
Strand 5
C
51 55anti-parallel
Strand 6
C
59 60anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 14first strand
Strand 2
C
108 113parallel
Strand 3
C
90 96anti-parallel
Strand 4
C
103 104anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
30 31first strand
Strand 2
C
36 37anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
120 124first strand
Strand 2
C
135 145anti-parallel
Strand 3
C
179 188anti-parallel
Strand 4
C
165 169anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
159 160first strand
Strand 2
C
151 156anti-parallel
Strand 3
C
197 203anti-parallel
Strand 4
C
211 216anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
26 29first strand
Strand 2
D
45 48anti-parallel
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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
32 36first strand
Strand 2
D
116 127parallel
Strand 3
D
104 113anti-parallel
Strand 4
D
53 61anti-parallel
Strand 5
D
64 70anti-parallel
Strand 6
D
74 77anti-parallel
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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
41 43first strand
Strand 2
D
93 95anti-parallel
Strand 3
D
85 87anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
3 7first strand
Strand 2
E
18 25anti-parallel
Strand 3
E
81 86anti-parallel
Strand 4
E
71 72anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
3 7first strand
Strand 2
E
18 25anti-parallel
Strand 3
E
81 86anti-parallel
Strand 4
E
75 76anti-parallel
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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
11 12first strand
Strand 2
E
120 124parallel
Strand 3
E
95 103anti-parallel
Strand 4
E
34 42anti-parallel
Strand 5
E
46 55anti-parallel
Strand 6
E
59 63anti-parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
11 12first strand
Strand 2
E
120 124parallel
Strand 3
E
95 103anti-parallel
Strand 4
E
113 116anti-parallel
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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
133 137first strand
Strand 2
E
148 158anti-parallel
Strand 3
E
189 198anti-parallel
Strand 4
E
176 178anti-parallel
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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
133 137first strand
Strand 2
E
148 158anti-parallel
Strand 3
E
189 198anti-parallel
Strand 4
E
182 183anti-parallel
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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
164 167first strand
Strand 2
E
207 213anti-parallel
Strand 3
E
218 224anti-parallel
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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
4 7first strand
Strand 2
F
19 25anti-parallel
Strand 3
F
76 81anti-parallel
Strand 4
F
68 72anti-parallel
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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
10 14first strand
Strand 2
F
108 113parallel
Strand 3
F
90 96anti-parallel
Strand 4
F
39 44anti-parallel
Strand 5
F
51 55anti-parallel
Strand 6
F
59 60anti-parallel
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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
10 14first strand
Strand 2
F
108 113parallel
Strand 3
F
90 96anti-parallel
Strand 4
F
103 104anti-parallel
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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
120 124first strand
Strand 2
F
135 145anti-parallel
Strand 3
F
179 188anti-parallel
Strand 4
F
165 169anti-parallel
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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
159 160first strand
Strand 2
F
151 156anti-parallel
Strand 3
F
197 203anti-parallel
Strand 4
F
211 216anti-parallel
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