Analysis of interatomic Contacts of Structural Units in PDB entry:
8JER

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JER entry

There are 5 chains in PDB entry 8JER (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 6	TYR 354
B	GLU 3	ASN 340
R	ASP 8	ASN 303
G	SER 8	ARG 62
H	ASP 1	LYS 248

There are 25 helices in PDB entry 8JER. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	32	Right-handed alpha
Helix 2	AA2	A	203	205	Right-handed 310
Helix 3	AA3	A	208	217	Right-handed 310
Helix 4	AA4	A	246	256	Right-handed alpha
Helix 5	AA5	A	271	282	Right-handed alpha
Helix 6	AA6	A	296	310	Right-handed alpha
Helix 7	AA7	A	330	351	Right-handed alpha
Helix 8	AA8	B	4	25	Right-handed alpha
Helix 9	AA9	B	29	35	Right-handed alpha
Helix 10	AB1	R	24	52	Right-handed alpha
Helix 11	AB2	R	60	89	Right-handed alpha
Helix 12	AB3	R	96	130	Right-handed alpha
Helix 13	AB4	R	134	139	Right-handed 310
Helix 14	AB5	R	140	160	Right-handed alpha
Helix 15	AB6	R	161	163	Right-handed 310
Helix 16	AB7	R	187	218	Right-handed alpha
Helix 17	AB8	R	226	262	Right-handed alpha
Helix 18	AB9	R	268	290	Right-handed alpha
Helix 19	AC1	R	290	295	Right-handed alpha
Helix 20	AC2	G	9	24	Right-handed alpha
Helix 21	AC3	G	29	44	Right-handed alpha
Helix 22	AC4	G	45	48	Right-handed 310
Helix 23	AC5	H	28	32	Right-handed 310
Helix 24	AC6	H	87	91	Right-handed 310
Helix 25	AC7	H	220	224	Right-handed 310

There are 14 sheets in PDB entry 8JER. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	191	first strand
Strand 2	A	196	201	anti-parallel
Strand 3	A	33	40	parallel
Strand 4	A	221	227	parallel
Strand 5	A	265	270	parallel
Strand 6	A	322	323	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	89	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	134	140	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	157	161	anti-parallel
Strand 3	B	165	168	anti-parallel
Strand 4	B	178	181	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	192	first strand
Strand 2	B	198	201	anti-parallel
Strand 3	B	209	212	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	260	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	307	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	11	12	first strand
Strand 2	R	17	18	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	170	171	first strand
Strand 2	R	174	175	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	17	25	anti-parallel
Strand 3	H	78	84	anti-parallel
Strand 4	H	68	71	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	115	119	parallel
Strand 3	H	92	97	anti-parallel
Strand 4	H	35	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	155	159	first strand
Strand 2	H	211	216	anti-parallel
Strand 3	H	203	208	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	194	195	first strand
Strand 2	H	186	190	anti-parallel
Strand 3	H	174	179	anti-parallel
Strand 4	H	225	231	anti-parallel
Strand 5	H	243	245	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JER

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JER