Analysis of interatomic Contacts of Structural Units in PDB entry:
8JET

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JET entry

There are 4 chains in PDB entry 8JET (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 74	SER 740
B	SER 73	SER 740
C	ILE 74	SER 740
D	SER 73	SER 740

There are137 helices in PDB entry 8JET. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	81	106	Right-handed alpha
Helix 2	AA2	A	111	113	Right-handed 310
Helix 3	AA3	A	114	132	Right-handed alpha
Helix 4	AA4	A	133	135	Right-handed 310
Helix 5	AA5	A	148	160	Right-handed alpha
Helix 6	AA6	A	160	169	Right-handed alpha
Helix 7	AA7	A	171	178	Right-handed alpha
Helix 8	AA8	A	181	193	Right-handed 310
Helix 9	AA9	A	194	207	Right-handed alpha
Helix 10	AB1	A	212	242	Right-handed alpha
Helix 11	AB2	A	244	251	Right-handed 310
Helix 12	AB3	A	271	287	Right-handed alpha
Helix 13	AB4	A	298	329	Right-handed alpha
Helix 14	AB5	A	331	351	Right-handed alpha
Helix 15	AB6	A	353	369	Right-handed alpha
Helix 16	AB7	A	377	381	Right-handed 310
Helix 17	AB8	A	382	399	Right-handed alpha
Helix 18	AB9	A	408	417	Right-handed alpha
Helix 19	AC1	A	472	479	Right-handed alpha
Helix 20	AC2	A	499	509	Right-handed alpha
Helix 21	AC3	A	509	522	Right-handed alpha
Helix 22	AC4	A	530	559	Right-handed alpha
Helix 23	AC5	A	560	570	Right-handed alpha
Helix 24	AC6	A	583	592	Right-handed alpha
Helix 25	AC7	A	593	603	Right-handed alpha
Helix 26	AC8	A	616	624	Right-handed alpha
Helix 27	AC9	A	626	637	Right-handed alpha
Helix 28	AD1	A	644	656	Right-handed alpha
Helix 29	AD2	A	658	666	Right-handed alpha
Helix 30	AD3	A	680	689	Right-handed alpha
Helix 31	AD4	A	691	699	Right-handed alpha
Helix 32	AD5	A	713	722	Right-handed alpha
Helix 33	AD6	A	723	740	Right-handed alpha
Helix 34	AD7	B	81	105	Right-handed alpha
Helix 35	AD8	B	111	113	Right-handed 310
Helix 36	AD9	B	114	132	Right-handed alpha
Helix 37	AE1	B	148	160	Right-handed alpha
Helix 38	AE2	B	160	167	Right-handed alpha
Helix 39	AE3	B	170	177	Right-handed alpha
Helix 40	AE4	B	182	194	Right-handed 310
Helix 41	AE5	B	195	207	Right-handed alpha
Helix 42	AE6	B	212	242	Right-handed alpha
Helix 43	AE7	B	244	251	Right-handed 310
Helix 44	AE8	B	270	287	Right-handed alpha
Helix 45	AE9	B	298	329	Right-handed alpha
Helix 46	AF1	B	331	351	Right-handed alpha
Helix 47	AF2	B	354	370	Right-handed alpha
Helix 48	AF3	B	377	381	Right-handed 310
Helix 49	AF4	B	382	394	Right-handed alpha
Helix 50	AF5	B	394	400	Right-handed alpha
Helix 51	AF6	B	401	405	Right-handed 310
Helix 52	AF7	B	408	417	Right-handed alpha
Helix 53	AF8	B	472	479	Right-handed alpha
Helix 54	AF9	B	498	509	Right-handed alpha
Helix 55	AG1	B	509	523	Right-handed alpha
Helix 56	AG2	B	527	533	Right-handed alpha
Helix 57	AG3	B	533	559	Right-handed alpha
Helix 58	AG4	B	560	570	Right-handed alpha
Helix 59	AG5	B	583	591	Right-handed alpha
Helix 60	AG6	B	593	602	Right-handed alpha
Helix 61	AG7	B	616	624	Right-handed alpha
Helix 62	AG8	B	626	636	Right-handed alpha
Helix 63	AG9	B	644	655	Right-handed alpha
Helix 64	AH1	B	657	666	Right-handed alpha
Helix 65	AH2	B	680	689	Right-handed alpha
Helix 66	AH3	B	690	700	Right-handed alpha
Helix 67	AH4	B	713	722	Right-handed alpha
Helix 68	AH5	B	723	740	Right-handed alpha
Helix 69	AH6	C	81	106	Right-handed alpha
Helix 70	AH7	C	111	113	Right-handed 310
Helix 71	AH8	C	114	132	Right-handed alpha
Helix 72	AH9	C	133	135	Right-handed 310
Helix 73	AI1	C	148	160	Right-handed alpha
Helix 74	AI2	C	160	169	Right-handed alpha
Helix 75	AI3	C	171	178	Right-handed alpha
Helix 76	AI4	C	181	193	Right-handed 310
Helix 77	AI5	C	194	207	Right-handed alpha
Helix 78	AI6	C	212	242	Right-handed alpha
Helix 79	AI7	C	244	251	Right-handed 310
Helix 80	AI8	C	271	287	Right-handed alpha
Helix 81	AI9	C	298	329	Right-handed alpha
Helix 82	AJ1	C	331	351	Right-handed alpha
Helix 83	AJ2	C	353	369	Right-handed alpha
Helix 84	AJ3	C	377	381	Right-handed 310
Helix 85	AJ4	C	382	394	Right-handed alpha
Helix 86	AJ5	C	394	399	Right-handed alpha
Helix 87	AJ6	C	408	417	Right-handed alpha
Helix 88	AJ7	C	472	479	Right-handed alpha
Helix 89	AJ8	C	499	509	Right-handed alpha
Helix 90	AJ9	C	509	522	Right-handed alpha
Helix 91	AK1	C	530	559	Right-handed alpha
Helix 92	AK2	C	560	570	Right-handed alpha
Helix 93	AK3	C	583	592	Right-handed alpha
Helix 94	AK4	C	593	603	Right-handed alpha
Helix 95	AK5	C	616	624	Right-handed alpha
Helix 96	AK6	C	626	637	Right-handed alpha
Helix 97	AK7	C	644	656	Right-handed alpha
Helix 98	AK8	C	658	666	Right-handed alpha
Helix 99	AK9	C	680	689	Right-handed alpha
Helix 100	AL1	C	691	699	Right-handed alpha
Helix 101	AL2	C	713	722	Right-handed alpha
Helix 102	AL3	C	723	740	Right-handed alpha
Helix 103	AL4	D	81	105	Right-handed alpha
Helix 104	AL5	D	111	113	Right-handed 310
Helix 105	AL6	D	114	132	Right-handed alpha
Helix 106	AL7	D	148	160	Right-handed alpha
Helix 107	AL8	D	160	167	Right-handed alpha
Helix 108	AL9	D	170	177	Right-handed alpha
Helix 109	AM1	D	182	194	Right-handed 310
Helix 110	AM2	D	195	207	Right-handed alpha
Helix 111	AM3	D	212	242	Right-handed alpha
Helix 112	AM4	D	244	251	Right-handed 310
Helix 113	AM5	D	271	287	Right-handed alpha
Helix 114	AM6	D	298	329	Right-handed alpha
Helix 115	AM7	D	331	351	Right-handed alpha
Helix 116	AM8	D	354	370	Right-handed alpha
Helix 117	AM9	D	377	381	Right-handed 310
Helix 118	AN1	D	382	394	Right-handed alpha
Helix 119	AN2	D	394	400	Right-handed alpha
Helix 120	AN3	D	401	405	Right-handed 310
Helix 121	AN4	D	408	417	Right-handed alpha
Helix 122	AN5	D	472	479	Right-handed alpha
Helix 123	AN6	D	498	509	Right-handed alpha
Helix 124	AN7	D	509	523	Right-handed alpha
Helix 125	AN8	D	527	533	Right-handed alpha
Helix 126	AN9	D	533	559	Right-handed alpha
Helix 127	AO1	D	560	570	Right-handed alpha
Helix 128	AO2	D	583	591	Right-handed alpha
Helix 129	AO3	D	593	602	Right-handed alpha
Helix 130	AO4	D	616	624	Right-handed alpha
Helix 131	AO5	D	626	636	Right-handed alpha
Helix 132	AO6	D	644	655	Right-handed alpha
Helix 133	AO7	D	657	667	Right-handed alpha
Helix 134	AO8	D	680	689	Right-handed alpha
Helix 135	AO9	D	690	700	Right-handed alpha
Helix 136	AP1	D	713	722	Right-handed alpha
Helix 137	AP2	D	723	740	Right-handed alpha

There are 8 sheets in PDB entry 8JET. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	420	424	first strand
Strand 2	A	492	498	anti-parallel
Strand 3	A	439	443	anti-parallel
Strand 4	A	469	471	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	429	431	first strand
Strand 2	A	485	488	anti-parallel
Strand 3	A	448	451	anti-parallel
Strand 4	A	463	465	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	420	424	first strand
Strand 2	B	492	497	anti-parallel
Strand 3	B	440	445	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	429	431	first strand
Strand 2	B	486	488	anti-parallel
Strand 3	B	448	449	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	420	424	first strand
Strand 2	C	492	498	anti-parallel
Strand 3	C	439	443	anti-parallel
Strand 4	C	469	471	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	429	431	first strand
Strand 2	C	485	488	anti-parallel
Strand 3	C	448	451	anti-parallel
Strand 4	C	463	465	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	420	424	first strand
Strand 2	D	492	497	anti-parallel
Strand 3	D	440	445	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	429	431	first strand
Strand 2	D	486	488	anti-parallel
Strand 3	D	448	449	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JET

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JET