Analysis of interatomic Contacts of Structural Units in PDB entry:
8JF2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JF2 entry

There are 8 chains in PDB entry 8JF2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -1LYS 415
B
 PHE -3LYS 415
C
 PHE -3LYS 415
D
 PHE -3LYS 415
F
 MET 1ALA 79
G
 MET 1ALA 79
H
 MET 1ALA 79
I
 MET 1ALA 79
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are102 helices in PDB entry 8JF2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 7Right-handed alpha
Helix 2
AA2
A
16 36Right-handed alpha
Helix 3
AA3
A
41 57Right-handed alpha
Helix 4
AA4
A
61 86Right-handed alpha
Helix 5
AA5
A
92 111Right-handed alpha
Helix 6
AA6
A
112 114Right-handed 310
Helix 7
AA7
A
125 128Right-handed 310
Helix 8
AA8
A
129 142Right-handed alpha
Helix 9
AA9
A
149 157Right-handed alpha
Helix 10
AB1
A
170 180Right-handed alpha
Helix 11
AB2
A
183 206Right-handed alpha
Helix 12
AB3
A
207 215Right-handed alpha
Helix 13
AB4
A
216 228Right-handed alpha
Helix 14
AB5
A
232 264Right-handed alpha
Helix 15
AB6
A
274 278Right-handed 310
Helix 16
AB7
A
280 285Right-handed alpha
Helix 17
AB8
A
289 300Right-handed alpha
Helix 18
AB9
A
301 312Right-handed alpha
Helix 19
AC1
A
316 337Right-handed alpha
Helix 20
AC2
A
339 374Right-handed alpha
Helix 21
AC3
A
382 405Right-handed alpha
Helix 22
AC4
A
405 411Right-handed alpha
Helix 23
AC5
B
0 7Right-handed alpha
Helix 24
AC6
B
16 36Right-handed alpha
Helix 25
AC7
B
42 57Right-handed alpha
Helix 26
AC8
B
62 88Right-handed alpha
Helix 27
AC9
B
90 115Right-handed alpha
Helix 28
AD1
B
125 128Right-handed 310
Helix 29
AD2
B
129 142Right-handed alpha
Helix 30
AD3
B
149 157Right-handed alpha
Helix 31
AD4
B
170 180Right-handed alpha
Helix 32
AD5
B
183 207Right-handed alpha
Helix 33
AD6
B
207 215Right-handed alpha
Helix 34
AD7
B
216 228Right-handed alpha
Helix 35
AD8
B
232 265Right-handed alpha
Helix 36
AD9
B
274 278Right-handed 310
Helix 37
AE1
B
280 286Right-handed alpha
Helix 38
AE2
B
289 300Right-handed alpha
Helix 39
AE3
B
300 311Right-handed alpha
Helix 40
AE4
B
316 337Right-handed alpha
Helix 41
AE5
B
339 374Right-handed alpha
Helix 42
AE6
B
381 405Right-handed alpha
Helix 43
AE7
B
405 412Right-handed alpha
Helix 44
AE8
C
0 8Right-handed alpha
Helix 45
AE9
C
16 35Right-handed alpha
Helix 46
AF1
C
40 57Right-handed alpha
Helix 47
AF2
C
62 88Right-handed alpha
Helix 48
AF3
C
90 111Right-handed alpha
Helix 49
AF4
C
125 128Right-handed 310
Helix 50
AF5
C
129 143Right-handed alpha
Helix 51
AF6
C
149 157Right-handed alpha
Helix 52
AF7
C
159 163Right-handed 310
Helix 53
AF8
C
170 180Right-handed alpha
Helix 54
AF9
C
183 206Right-handed alpha
Helix 55
AG1
C
207 214Right-handed alpha
Helix 56
AG2
C
216 228Right-handed alpha
Helix 57
AG3
C
232 264Right-handed alpha
Helix 58
AG4
C
280 285Right-handed alpha
Helix 59
AG5
C
289 300Right-handed alpha
Helix 60
AG6
C
300 311Right-handed alpha
Helix 61
AG7
C
316 337Right-handed alpha
Helix 62
AG8
C
339 373Right-handed alpha
Helix 63
AG9
C
381 404Right-handed alpha
Helix 64
AH1
C
405 412Right-handed alpha
Helix 65
AH2
D
0 5Right-handed alpha
Helix 66
AH3
D
17 27Right-handed alpha
Helix 67
AH4
D
27 36Right-handed alpha
Helix 68
AH5
D
42 57Right-handed alpha
Helix 69
AH6
D
62 88Right-handed alpha
Helix 70
AH7
D
90 115Right-handed alpha
Helix 71
AH8
D
125 128Right-handed 310
Helix 72
AH9
D
129 142Right-handed alpha
Helix 73
AI1
D
149 157Right-handed alpha
Helix 74
AI2
D
170 180Right-handed alpha
Helix 75
AI3
D
183 207Right-handed alpha
Helix 76
AI4
D
207 215Right-handed alpha
Helix 77
AI5
D
216 228Right-handed alpha
Helix 78
AI6
D
232 265Right-handed alpha
Helix 79
AI7
D
280 285Right-handed alpha
Helix 80
AI8
D
289 300Right-handed alpha
Helix 81
AI9
D
301 312Right-handed alpha
Helix 82
AJ1
D
316 337Right-handed alpha
Helix 83
AJ2
D
339 373Right-handed alpha
Helix 84
AJ3
D
381 405Right-handed alpha
Helix 85
AJ4
D
405 411Right-handed alpha
Helix 86
AJ5
F
2 14Right-handed alpha
Helix 87
AJ6
F
36 50Right-handed alpha
Helix 88
AJ7
F
65 79Right-handed alpha
Helix 89
AJ8
G
3 16Right-handed alpha
Helix 90
AJ9
G
26 31Right-handed alpha
Helix 91
AK1
G
37 49Right-handed alpha
Helix 92
AK2
G
65 77Right-handed alpha
Helix 93
AK3
H
2 16Right-handed alpha
Helix 94
AK4
H
26 31Right-handed alpha
Helix 95
AK5
H
36 45Right-handed alpha
Helix 96
AK6
H
45 50Right-handed alpha
Helix 97
AK7
H
65 79Right-handed alpha
Helix 98
AK8
I
2 15Right-handed alpha
Helix 99
AK9
I
26 31Right-handed alpha
Helix 100
AL1
I
35 37Right-handed 310
Helix 101
AL2
I
38 49Right-handed alpha
Helix 102
AL3
I
65 79Right-handed alpha
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There are no sheets in PDB entry 8JF2
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