Analysis of interatomic Contacts of Structural Units in PDB entry:
8JF3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JF3 entry

There are 2 chains in PDB entry 8JF3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 260LEU 536
B
 ASP 261LEU 536
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 8JF3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
349 355Right-handed alpha
Helix 2
AA2
A
356 360Right-handed 310
Helix 3
AA3
A
362 383Right-handed alpha
Helix 4
AA4
A
391 393Right-handed 310
Helix 5
AA5
A
399 401Right-handed 310
Helix 6
AA6
A
433 439Right-handed alpha
Helix 7
AA7
A
443 459Right-handed alpha
Helix 8
AA8
A
470 480Right-handed alpha
Helix 9
AA9
A
491 502Right-handed alpha
Helix 10
AB1
A
505 509Right-handed 310
Helix 11
AB2
A
511 521Right-handed alpha
Helix 12
AB3
A
521 526Right-handed alpha
Helix 13
AB4
B
348 355Right-handed alpha
Helix 14
AB5
B
357 361Right-handed 310
Helix 15
AB6
B
362 383Right-handed alpha
Helix 16
AB7
B
391 393Right-handed 310
Helix 17
AB8
B
399 401Right-handed 310
Helix 18
AB9
B
433 438Right-handed alpha
Helix 19
AC1
B
443 460Right-handed alpha
Helix 20
AC2
B
470 480Right-handed alpha
Helix 21
AC3
B
491 502Right-handed alpha
Helix 22
AC4
B
511 521Right-handed alpha
Helix 23
AC5
B
521 526Right-handed alpha
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There are 4 sheets in PDB entry 8JF3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 271first strand
Strand 2
A
284 288anti-parallel
Strand 3
A
294 298anti-parallel
Strand 4
A
339 342anti-parallel
Strand 5
A
328 331anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 348first strand
Strand 2
A
395 397anti-parallel
Strand 3
A
403 405anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
274 277first strand
Strand 2
B
284 289anti-parallel
Strand 3
B
293 298anti-parallel
Strand 4
B
338 342anti-parallel
Strand 5
B
328 332anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
395 397first strand
Strand 2
B
403 405anti-parallel
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