Analysis of interatomic Contacts of Structural Units in PDB entry:
8JF7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JF7 entry

There are 10 chains in PDB entry 8JF7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 27	GLU 797
B	LEU 34	CYS 800
C	LYS 25	GLU 797
D	HIS 34	MET 926
E	ASP 23	CYS 259
F	ASP 20	LYS 236
G	ASP 23	CYS 259
H	ASP 20	LYS 236
K	ASP 1	GLY 212
J	GLN 1	ARG 227

There are 94 helices in PDB entry 8JF7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	48	Right-handed alpha
Helix 2	AA2	A	70	82	Right-handed alpha
Helix 3	AA3	A	104	112	Right-handed alpha
Helix 4	AA4	A	143	158	Right-handed alpha
Helix 5	AA5	A	170	187	Right-handed alpha
Helix 6	AA6	A	204	212	Right-handed alpha
Helix 7	AA7	A	224	238	Right-handed alpha
Helix 8	AA8	A	257	262	Right-handed alpha
Helix 9	AA9	A	276	298	Right-handed alpha
Helix 10	AB1	A	318	326	Right-handed alpha
Helix 11	AB2	A	457	470	Right-handed alpha
Helix 12	AB3	A	502	508	Right-handed alpha
Helix 13	AB4	A	521	525	Right-handed 310
Helix 14	AB5	A	669	674	Right-handed alpha
Helix 15	AB6	A	687	696	Right-handed alpha
Helix 16	AB7	A	699	708	Right-handed alpha
Helix 17	AB8	A	714	723	Right-handed alpha
Helix 18	AB9	A	732	743	Right-handed alpha
Helix 19	AC1	A	768	782	Right-handed alpha
Helix 20	AC2	A	783	793	Right-handed alpha
Helix 21	AC3	B	47	56	Right-handed 310
Helix 22	AC4	B	78	91	Right-handed alpha
Helix 23	AC5	B	106	120	Right-handed alpha
Helix 24	AC6	B	128	133	Right-handed 310
Helix 25	AC7	B	150	165	Right-handed alpha
Helix 26	AC8	B	180	194	Right-handed alpha
Helix 27	AC9	B	215	222	Right-handed alpha
Helix 28	AD1	B	232	246	Right-handed alpha
Helix 29	AD2	B	287	307	Right-handed alpha
Helix 30	AD3	B	342	346	Right-handed 310
Helix 31	AD4	B	458	471	Right-handed alpha
Helix 32	AD5	B	488	492	Right-handed 310
Helix 33	AD6	B	494	502	Right-handed alpha
Helix 34	AD7	B	516	521	Right-handed alpha
Helix 35	AD8	B	688	698	Right-handed alpha
Helix 36	AD9	B	698	708	Right-handed alpha
Helix 37	AE1	B	712	723	Right-handed alpha
Helix 38	AE2	B	732	740	Right-handed alpha
Helix 39	AE3	B	770	783	Right-handed alpha
Helix 40	AE4	B	787	796	Right-handed alpha
Helix 41	AE5	C	35	49	Right-handed alpha
Helix 42	AE6	C	70	84	Right-handed alpha
Helix 43	AE7	C	104	112	Right-handed alpha
Helix 44	AE8	C	143	155	Right-handed alpha
Helix 45	AE9	C	171	187	Right-handed alpha
Helix 46	AF1	C	203	214	Right-handed alpha
Helix 47	AF2	C	224	238	Right-handed alpha
Helix 48	AF3	C	251	255	Right-handed alpha
Helix 49	AF4	C	279	298	Right-handed alpha
Helix 50	AF5	C	317	327	Right-handed alpha
Helix 51	AF6	C	458	470	Right-handed alpha
Helix 52	AF7	C	500	508	Right-handed alpha
Helix 53	AF8	C	522	527	Right-handed alpha
Helix 54	AF9	C	669	674	Right-handed alpha
Helix 55	AG1	C	687	696	Right-handed alpha
Helix 56	AG2	C	699	706	Right-handed alpha
Helix 57	AG3	C	713	723	Right-handed alpha
Helix 58	AG4	C	733	743	Right-handed alpha
Helix 59	AG5	C	768	782	Right-handed alpha
Helix 60	AG6	C	784	793	Right-handed alpha
Helix 61	AG7	D	123	138	Right-handed alpha
Helix 62	AG8	D	181	189	Right-handed alpha
Helix 63	AG9	D	202	217	Right-handed alpha
Helix 64	AH1	D	246	261	Right-handed alpha
Helix 65	AH2	D	275	284	Right-handed alpha
Helix 66	AH3	D	304	322	Right-handed alpha
Helix 67	AH4	D	331	346	Right-handed alpha
Helix 68	AH5	D	384	407	Right-handed alpha
Helix 69	AH6	D	407	412	Right-handed alpha
Helix 70	AH7	D	429	437	Right-handed alpha
Helix 71	AH8	D	496	501	Right-handed alpha
Helix 72	AH9	D	550	563	Right-handed alpha
Helix 73	AI1	D	578	592	Right-handed alpha
Helix 74	AI2	D	614	623	Right-handed alpha
Helix 75	AI3	D	782	787	Right-handed alpha
Helix 76	AI4	D	800	810	Right-handed alpha
Helix 77	AI5	D	811	813	Right-handed 310
Helix 78	AI6	D	814	820	Right-handed alpha
Helix 79	AI7	D	824	834	Right-handed alpha
Helix 80	AI8	D	846	855	Right-handed alpha
Helix 81	AI9	D	882	898	Right-handed alpha
Helix 82	AJ1	D	898	905	Right-handed alpha
Helix 83	AJ2	E	166	172	Right-handed alpha
Helix 84	AJ3	E	227	233	Right-handed alpha
Helix 85	AJ4	F	81	85	Right-handed 310
Helix 86	AJ5	F	212	216	Right-handed 310
Helix 87	AJ6	G	166	171	Right-handed alpha
Helix 88	AJ7	G	227	234	Right-handed alpha
Helix 89	AJ8	H	138	143	Right-handed alpha
Helix 90	AJ9	K	79	83	Right-handed 310
Helix 91	AK1	K	121	128	Right-handed alpha
Helix 92	AK2	K	183	189	Right-handed alpha
Helix 93	AK3	J	88	92	Right-handed 310
Helix 94	AK4	J	198	203	Right-handed 310

There are 49 sheets in PDB entry 8JF7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	29	first strand
Strand 2	A	61	62	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	33	first strand
Strand 2	A	65	66	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	A	137	138	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	165	first strand
Strand 2	A	219	220	parallel
Strand 3	A	247	249	parallel
Strand 4	A	267	268	parallel
Strand 5	A	354	355	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	366	367	first strand
Strand 2	A	372	373	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	478	first strand
Strand 2	A	397	402	parallel
Strand 3	A	512	518	parallel
Strand 4	A	758	762	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	434	438	first strand
Strand 2	A	451	455	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	73	first strand
Strand 2	B	37	40	parallel
Strand 3	B	98	101	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	126	first strand
Strand 2	B	145	146	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	200	first strand
Strand 2	B	169	175	parallel
Strand 3	B	204	206	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	200	first strand
Strand 2	B	169	175	parallel
Strand 3	B	226	229	parallel
Strand 4	B	254	257	parallel
Strand 5	B	277	280	parallel
Strand 6	B	362	366	anti-parallel
Strand 7	B	372	377	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	408	410	first strand
Strand 2	B	477	479	parallel
Strand 3	B	434	438	parallel
Strand 4	B	453	456	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	440	441	first strand
Strand 2	B	449	450	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	507	513	first strand
Strand 2	B	761	765	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	533	537	first strand
Strand 2	B	727	731	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	32	first strand
Strand 2	C	90	92	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	165	first strand
Strand 2	C	218	220	parallel
Strand 3	C	246	250	parallel
Strand 4	C	267	269	parallel
Strand 5	C	352	355	anti-parallel
Strand 6	C	362	367	anti-parallel
Strand 7	C	372	373	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	475	478	first strand
Strand 2	C	399	402	parallel
Strand 3	C	512	516	parallel
Strand 4	C	760	762	anti-parallel
Strand 5	C	528	529	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	409	413	first strand
Strand 2	C	451	457	anti-parallel
Strand 3	C	434	438	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	729	732	first strand
Strand 2	C	534	541	anti-parallel
Strand 3	C	753	758	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	683	684	first strand
Strand 2	C	710	711	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	148	152	first strand
Strand 2	D	48	52	parallel
Strand 3	D	195	197	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	266	268	first strand
Strand 2	D	324	327	parallel
Strand 3	D	353	356	parallel
Strand 4	D	374	376	parallel
Strand 5	D	467	468	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	517	519	first strand
Strand 2	D	597	599	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	541	544	first strand
Strand 2	D	573	576	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	608	609	first strand
Strand 2	D	612	613	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	643	644	first strand
Strand 2	D	876	877	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	844	845	first strand
Strand 2	D	652	657	anti-parallel
Strand 3	D	862	870	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	56	57	first strand
Strand 2	E	115	116	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	94	95	first strand
Strand 2	E	86	90	anti-parallel
Strand 3	E	74	78	anti-parallel
Strand 4	E	128	131	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	69	70	first strand
Strand 2	F	78	79	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	112	113	first strand
Strand 2	F	132	133	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	36	37	first strand
Strand 2	H	206	207	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	56	57	first strand
Strand 2	G	114	116	anti-parallel
Strand 3	G	104	105	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	94	95	first strand
Strand 2	G	87	90	anti-parallel
Strand 3	G	74	79	anti-parallel
Strand 4	G	126	127	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	94	95	first strand
Strand 2	G	87	90	anti-parallel
Strand 3	G	74	79	anti-parallel
Strand 4	G	130	131	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	159	162	first strand
Strand 2	G	179	182	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	90	92	first strand
Strand 2	H	97	99	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	19	20	first strand
Strand 2	K	70	75	anti-parallel
Strand 3	K	23	24	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	19	20	first strand
Strand 2	K	70	75	anti-parallel
Strand 3	K	62	65	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	45	46	first strand
Strand 2	K	34	38	anti-parallel
Strand 3	K	85	89	anti-parallel
Strand 4	K	102	103	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	48	49	first strand
Strand 2	K	53	54	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	116	118	first strand
Strand 2	K	129	139	anti-parallel
Strand 3	K	173	182	anti-parallel
Strand 4	K	159	160	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	145	147	first strand
Strand 2	K	194	197	anti-parallel
Strand 3	K	205	207	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	7	first strand
Strand 2	J	20	25	anti-parallel
Strand 3	J	79	83	anti-parallel
Strand 4	J	70	74	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	11	12	first strand
Strand 2	J	115	116	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	48	53	first strand
Strand 2	J	36	40	anti-parallel
Strand 3	J	96	98	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	130	132	first strand
Strand 2	J	151	155	anti-parallel
Strand 3	J	189	191	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	209	211	first strand
Strand 2	J	222	224	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JF7

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JF7