Analysis of interatomic Contacts of Structural Units in PDB entry:
8JFH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JFH entry

There are 6 chains in PDB entry 8JFH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0MET 247
B
 SER 0MET 247
C
 SER 0MET 247
D
 SER 0MET 247
E
 LEU 0ALA 78
F
 SER -5ASN 75
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 8JFH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 28Right-handed alpha
Helix 2
AA2
A
40 53Right-handed alpha
Helix 3
AA3
A
66 82Right-handed alpha
Helix 4
AA4
A
98 102Right-handed 310
Helix 5
AA5
A
103 115Right-handed alpha
Helix 6
AA6
A
115 130Right-handed alpha
Helix 7
AA7
A
142 148Right-handed alpha
Helix 8
AA8
A
152 174Right-handed alpha
Helix 9
AA9
A
203 207Right-handed alpha
Helix 10
AB1
A
215 228Right-handed alpha
Helix 11
AB2
A
229 232Right-handed 310
Helix 12
AB3
B
15 28Right-handed alpha
Helix 13
AB4
B
39 53Right-handed alpha
Helix 14
AB5
B
66 82Right-handed alpha
Helix 15
AB6
B
98 102Right-handed 310
Helix 16
AB7
B
103 130Right-handed alpha
Helix 17
AB8
B
152 175Right-handed alpha
Helix 18
AB9
B
204 208Right-handed 310
Helix 19
AC1
B
215 228Right-handed alpha
Helix 20
AC2
B
229 232Right-handed 310
Helix 21
AC3
C
15 28Right-handed alpha
Helix 22
AC4
C
40 53Right-handed alpha
Helix 23
AC5
C
66 82Right-handed alpha
Helix 24
AC6
C
98 102Right-handed 310
Helix 25
AC7
C
103 130Right-handed alpha
Helix 26
AC8
C
152 174Right-handed alpha
Helix 27
AC9
C
202 206Right-handed alpha
Helix 28
AD1
C
216 228Right-handed alpha
Helix 29
AD2
C
229 232Right-handed 310
Helix 30
AD3
D
15 28Right-handed alpha
Helix 31
AD4
D
39 53Right-handed alpha
Helix 32
AD5
D
66 82Right-handed alpha
Helix 33
AD6
D
98 102Right-handed 310
Helix 34
AD7
D
103 115Right-handed alpha
Helix 35
AD8
D
115 131Right-handed alpha
Helix 36
AD9
D
142 148Right-handed alpha
Helix 37
AE1
D
152 174Right-handed alpha
Helix 38
AE2
D
202 207Right-handed alpha
Helix 39
AE3
D
215 228Right-handed alpha
Helix 40
AE4
D
229 232Right-handed 310
Helix 41
AE5
E
1 16Right-handed alpha
Helix 42
AE6
E
18 22Right-handed 310
Helix 43
AE7
E
35 51Right-handed alpha
Helix 44
AE8
E
55 60Right-handed alpha
Helix 45
AE9
E
64 76Right-handed alpha
Helix 46
AF1
F
-4 16Right-handed alpha
Helix 47
AF2
F
18 22Right-handed 310
Helix 48
AF3
F
35 50Right-handed alpha
Helix 49
AF4
F
55 60Right-handed alpha
Helix 50
AF5
F
64 74Right-handed alpha
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There are 5 sheets in PDB entry 8JFH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 61first strand
Strand 2
A
31 36parallel
Strand 3
A
7 10parallel
Strand 4
A
86 89parallel
Strand 5
A
135 140parallel
Strand 6
A
178 185parallel
Strand 7
A
238 241parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 61first strand
Strand 2
B
31 36parallel
Strand 3
B
7 10parallel
Strand 4
B
86 89parallel
Strand 5
B
135 140parallel
Strand 6
B
178 185parallel
Strand 7
B
238 241parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
57 61first strand
Strand 2
C
31 36parallel
Strand 3
C
7 10parallel
Strand 4
C
86 89parallel
Strand 5
C
135 140parallel
Strand 6
C
178 185parallel
Strand 7
C
238 241parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
188 189first strand
Strand 2
C
214 215parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
57 61first strand
Strand 2
D
31 36parallel
Strand 3
D
7 10parallel
Strand 4
D
86 89parallel
Strand 5
D
135 140parallel
Strand 6
D
178 185parallel
Strand 7
D
238 241parallel
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