Analysis of interatomic Contacts of Structural Units in PDB entry:
8JFM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JFM entry

There are 8 chains in PDB entry 8JFM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	HIS 272
B	MET 1	HIS 272
C	MET 1	LYS 273
D	MET 1	HIS 272
E	MET 1	HIS 272
F	MET 1	HIS 272
G	MET 1	HIS 272
H	MET 1	HIS 272

There are122 helices in PDB entry 8JFM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	31	Right-handed alpha
Helix 2	AA2	A	41	55	Right-handed alpha
Helix 3	AA3	A	67	69	Right-handed 310
Helix 4	AA4	A	70	83	Right-handed alpha
Helix 5	AA5	A	96	101	Right-handed 310
Helix 6	AA6	A	108	120	Right-handed alpha
Helix 7	AA7	A	120	131	Right-handed alpha
Helix 8	AA8	A	145	149	Right-handed 310
Helix 9	AA9	A	156	178	Right-handed alpha
Helix 10	AB1	A	193	199	Right-handed alpha
Helix 11	AB2	A	201	213	Right-handed alpha
Helix 12	AB3	A	220	233	Right-handed alpha
Helix 13	AB4	A	234	237	Right-handed 310
Helix 14	AB5	A	249	253	Right-handed 310
Helix 15	AB6	A	268	272	Right-handed alpha
Helix 16	AB7	B	19	31	Right-handed alpha
Helix 17	AB8	B	41	55	Right-handed alpha
Helix 18	AB9	B	67	69	Right-handed 310
Helix 19	AC1	B	70	82	Right-handed alpha
Helix 20	AC2	B	96	101	Right-handed 310
Helix 21	AC3	B	103	107	Right-handed 310
Helix 22	AC4	B	108	120	Right-handed alpha
Helix 23	AC5	B	120	131	Right-handed alpha
Helix 24	AC6	B	145	149	Right-handed 310
Helix 25	AC7	B	156	178	Right-handed alpha
Helix 26	AC8	B	195	200	Right-handed 310
Helix 27	AC9	B	201	213	Right-handed alpha
Helix 28	AD1	B	220	233	Right-handed alpha
Helix 29	AD2	B	234	237	Right-handed 310
Helix 30	AD3	B	249	253	Right-handed 310
Helix 31	AD4	B	267	272	Right-handed alpha
Helix 32	AD5	C	19	31	Right-handed alpha
Helix 33	AD6	C	41	55	Right-handed alpha
Helix 34	AD7	C	67	69	Right-handed 310
Helix 35	AD8	C	70	82	Right-handed alpha
Helix 36	AD9	C	96	101	Right-handed alpha
Helix 37	AE1	C	108	120	Right-handed alpha
Helix 38	AE2	C	120	131	Right-handed alpha
Helix 39	AE3	C	145	149	Right-handed 310
Helix 40	AE4	C	156	178	Right-handed alpha
Helix 41	AE5	C	193	198	Right-handed alpha
Helix 42	AE6	C	201	213	Right-handed alpha
Helix 43	AE7	C	220	233	Right-handed alpha
Helix 44	AE8	C	234	237	Right-handed 310
Helix 45	AE9	C	249	253	Right-handed 310
Helix 46	AF1	C	267	272	Right-handed alpha
Helix 47	AF2	D	19	31	Right-handed alpha
Helix 48	AF3	D	41	55	Right-handed alpha
Helix 49	AF4	D	67	69	Right-handed 310
Helix 50	AF5	D	70	82	Right-handed alpha
Helix 51	AF6	D	96	101	Right-handed 310
Helix 52	AF7	D	103	107	Right-handed 310
Helix 53	AF8	D	108	120	Right-handed alpha
Helix 54	AF9	D	120	131	Right-handed alpha
Helix 55	AG1	D	145	149	Right-handed 310
Helix 56	AG2	D	156	178	Right-handed alpha
Helix 57	AG3	D	193	198	Right-handed alpha
Helix 58	AG4	D	201	213	Right-handed alpha
Helix 59	AG5	D	220	233	Right-handed alpha
Helix 60	AG6	D	234	237	Right-handed 310
Helix 61	AG7	D	249	253	Right-handed 310
Helix 62	AG8	D	268	272	Right-handed alpha
Helix 63	AG9	E	19	31	Right-handed alpha
Helix 64	AH1	E	41	55	Right-handed alpha
Helix 65	AH2	E	67	69	Right-handed 310
Helix 66	AH3	E	70	83	Right-handed alpha
Helix 67	AH4	E	97	101	Right-handed 310
Helix 68	AH5	E	108	120	Right-handed alpha
Helix 69	AH6	E	120	131	Right-handed alpha
Helix 70	AH7	E	145	149	Right-handed 310
Helix 71	AH8	E	156	178	Right-handed alpha
Helix 72	AH9	E	193	198	Right-handed alpha
Helix 73	AI1	E	201	213	Right-handed alpha
Helix 74	AI2	E	220	233	Right-handed alpha
Helix 75	AI3	E	234	237	Right-handed 310
Helix 76	AI4	E	249	253	Right-handed 310
Helix 77	AI5	E	268	272	Right-handed alpha
Helix 78	AI6	F	19	31	Right-handed alpha
Helix 79	AI7	F	41	55	Right-handed alpha
Helix 80	AI8	F	67	69	Right-handed 310
Helix 81	AI9	F	70	82	Right-handed alpha
Helix 82	AJ1	F	96	101	Right-handed 310
Helix 83	AJ2	F	108	120	Right-handed alpha
Helix 84	AJ3	F	120	131	Right-handed alpha
Helix 85	AJ4	F	145	149	Right-handed 310
Helix 86	AJ5	F	156	178	Right-handed alpha
Helix 87	AJ6	F	193	198	Right-handed alpha
Helix 88	AJ7	F	201	213	Right-handed alpha
Helix 89	AJ8	F	220	233	Right-handed alpha
Helix 90	AJ9	F	234	237	Right-handed 310
Helix 91	AK1	F	249	253	Right-handed 310
Helix 92	AK2	F	267	272	Right-handed alpha
Helix 93	AK3	G	19	31	Right-handed alpha
Helix 94	AK4	G	41	55	Right-handed alpha
Helix 95	AK5	G	67	69	Right-handed 310
Helix 96	AK6	G	70	82	Right-handed alpha
Helix 97	AK7	G	108	120	Right-handed alpha
Helix 98	AK8	G	120	131	Right-handed alpha
Helix 99	AK9	G	145	149	Right-handed 310
Helix 100	AL1	G	155	178	Right-handed alpha
Helix 101	AL2	G	193	198	Right-handed alpha
Helix 102	AL3	G	201	213	Right-handed alpha
Helix 103	AL4	G	220	233	Right-handed alpha
Helix 104	AL5	G	234	237	Right-handed 310
Helix 105	AL6	G	249	253	Right-handed 310
Helix 106	AL7	G	268	272	Right-handed alpha
Helix 107	AL8	H	19	31	Right-handed alpha
Helix 108	AL9	H	41	55	Right-handed alpha
Helix 109	AM1	H	67	69	Right-handed 310
Helix 110	AM2	H	70	82	Right-handed alpha
Helix 111	AM3	H	96	101	Right-handed 310
Helix 112	AM4	H	103	107	Right-handed 310
Helix 113	AM5	H	108	120	Right-handed alpha
Helix 114	AM6	H	120	131	Right-handed alpha
Helix 115	AM7	H	145	149	Right-handed 310
Helix 116	AM8	H	156	178	Right-handed alpha
Helix 117	AM9	H	193	199	Right-handed alpha
Helix 118	AN1	H	201	213	Right-handed alpha
Helix 119	AN2	H	220	233	Right-handed alpha
Helix 120	AN3	H	234	237	Right-handed 310
Helix 121	AN4	H	249	253	Right-handed 310
Helix 122	AN5	H	268	272	Right-handed alpha

There are 13 sheets in PDB entry 8JFM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	62	first strand
Strand 2	A	34	39	parallel
Strand 3	A	8	12	parallel
Strand 4	A	85	90	parallel
Strand 5	A	134	144	parallel
Strand 6	A	182	188	parallel
Strand 7	A	243	246	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	261	first strand
Strand 2	A	264	267	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	62	first strand
Strand 2	B	34	39	parallel
Strand 3	B	8	12	parallel
Strand 4	B	85	90	parallel
Strand 5	B	134	144	parallel
Strand 6	B	182	188	parallel
Strand 7	B	243	246	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	62	first strand
Strand 2	C	34	39	parallel
Strand 3	C	8	12	parallel
Strand 4	C	85	90	parallel
Strand 5	C	134	144	parallel
Strand 6	C	182	188	parallel
Strand 7	C	243	246	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	62	first strand
Strand 2	D	34	39	parallel
Strand 3	D	8	12	parallel
Strand 4	D	85	90	parallel
Strand 5	D	134	144	parallel
Strand 6	D	182	188	parallel
Strand 7	D	243	246	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	258	259	first strand
Strand 2	D	266	267	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	60	62	first strand
Strand 2	E	34	39	parallel
Strand 3	E	8	12	parallel
Strand 4	E	85	90	parallel
Strand 5	E	134	144	parallel
Strand 6	E	182	188	parallel
Strand 7	E	243	246	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	258	259	first strand
Strand 2	E	266	267	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	60	62	first strand
Strand 2	F	34	39	parallel
Strand 3	F	8	12	parallel
Strand 4	F	85	90	parallel
Strand 5	F	134	144	parallel
Strand 6	F	182	188	parallel
Strand 7	F	243	246	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	60	62	first strand
Strand 2	G	34	39	parallel
Strand 3	G	8	12	parallel
Strand 4	G	85	90	parallel
Strand 5	G	134	144	parallel
Strand 6	G	182	188	parallel
Strand 7	G	243	246	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	258	259	first strand
Strand 2	G	266	267	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	60	62	first strand
Strand 2	H	34	39	parallel
Strand 3	H	8	12	parallel
Strand 4	H	85	90	parallel
Strand 5	H	134	144	parallel
Strand 6	H	182	188	parallel
Strand 7	H	243	246	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	258	259	first strand
Strand 2	H	266	267	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JFM

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JFM