Analysis of interatomic Contacts of Structural Units in PDB entry:
8JFN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JFN entry

There are 2 chains in PDB entry 8JFN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2LYS 273
B
 SER -1LYS 76
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 8JFN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 30Right-handed alpha
Helix 2
AA2
A
41 55Right-handed alpha
Helix 3
AA3
A
67 69Right-handed 310
Helix 4
AA4
A
70 82Right-handed alpha
Helix 5
AA5
A
96 101Right-handed 310
Helix 6
AA6
A
108 120Right-handed alpha
Helix 7
AA7
A
120 131Right-handed alpha
Helix 8
AA8
A
145 149Right-handed 310
Helix 9
AA9
A
155 178Right-handed alpha
Helix 10
AB1
A
194 199Right-handed 310
Helix 11
AB2
A
201 213Right-handed alpha
Helix 12
AB3
A
220 233Right-handed alpha
Helix 13
AB4
A
234 237Right-handed 310
Helix 14
AB5
A
249 253Right-handed 310
Helix 15
AB6
A
268 273Right-handed alpha
Helix 16
AB7
B
0 16Right-handed alpha
Helix 17
AB8
B
18 22Right-handed 310
Helix 18
AB9
B
35 51Right-handed alpha
Helix 19
AC1
B
55 61Right-handed alpha
Helix 20
AC2
B
64 76Right-handed alpha
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There are 2 sheets in PDB entry 8JFN. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 62first strand
Strand 2
A
34 39parallel
Strand 3
A
8 12parallel
Strand 4
A
85 90parallel
Strand 5
A
134 144parallel
Strand 6
A
182 188parallel
Strand 7
A
243 246parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 260first strand
Strand 2
A
265 267anti-parallel
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