Analysis of interatomic Contacts of Structural Units in PDB entry:
8JFV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JFV entry

There are 2 chains in PDB entry 8JFV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 60ARG 333
B
 THR 61ARG 333
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 8JFV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
73 91Right-handed alpha
Helix 2
AA2
A
102 116Right-handed alpha
Helix 3
AA3
A
131 136Right-handed 310
Helix 4
AA4
A
162 175Right-handed alpha
Helix 5
AA5
A
191 205Right-handed alpha
Helix 6
AA6
A
221 234Right-handed alpha
Helix 7
AA7
A
246 262Right-handed alpha
Helix 8
AA8
A
276 282Right-handed 310
Helix 9
AA9
A
292 309Right-handed alpha
Helix 10
AB1
B
73 88Right-handed alpha
Helix 11
AB2
B
89 91Right-handed 310
Helix 12
AB3
B
102 115Right-handed alpha
Helix 13
AB4
B
133 137Right-handed 310
Helix 14
AB5
B
162 176Right-handed alpha
Helix 15
AB6
B
191 205Right-handed alpha
Helix 16
AB7
B
221 236Right-handed alpha
Helix 17
AB8
B
246 262Right-handed alpha
Helix 18
AB9
B
276 282Right-handed 310
Helix 19
AC1
B
292 309Right-handed alpha
Helix 20
AC2
B
331 333Right-handed 310
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There are 4 sheets in PDB entry 8JFV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 98first strand
Strand 2
A
63 68parallel
Strand 3
A
120 123parallel
Strand 4
A
144 147parallel
Strand 5
A
157 161parallel
Strand 6
A
317 321parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 217first strand
Strand 2
A
182 187parallel
Strand 3
A
241 244parallel
Strand 4
A
269 273parallel
Strand 5
A
285 290parallel
Strand 6
A
324 329anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 98first strand
Strand 2
B
63 68parallel
Strand 3
B
120 123parallel
Strand 4
B
144 147parallel
Strand 5
B
157 161parallel
Strand 6
B
317 321parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
212 217first strand
Strand 2
B
182 187parallel
Strand 3
B
241 244parallel
Strand 4
B
269 273parallel
Strand 5
B
285 290parallel
Strand 6
B
324 329anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il