Analysis of interatomic Contacts of Structural Units in PDB entry:
8JFW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JFW entry

There are 2 chains in PDB entry 8JFW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 4	SER 148
D	MET 1	SER 661

There are 35 helices in PDB entry 8JFW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	18	Right-handed alpha
Helix 2	AA2	A	32	40	Right-handed alpha
Helix 3	AA3	A	45	55	Right-handed alpha
Helix 4	AA4	A	65	77	Right-handed alpha
Helix 5	AA5	A	84	92	Right-handed alpha
Helix 6	AA6	A	102	113	Right-handed alpha
Helix 7	AA7	A	118	129	Right-handed alpha
Helix 8	AA8	A	138	148	Right-handed alpha
Helix 9	AA9	D	2	46	Right-handed alpha
Helix 10	AB1	D	46	59	Right-handed alpha
Helix 11	AB2	D	101	114	Right-handed alpha
Helix 12	AB3	D	121	137	Right-handed alpha
Helix 13	AB4	D	162	174	Right-handed alpha
Helix 14	AB5	D	194	209	Right-handed alpha
Helix 15	AB6	D	222	227	Right-handed alpha
Helix 16	AB7	D	230	239	Right-handed alpha
Helix 17	AB8	D	242	256	Right-handed alpha
Helix 18	AB9	D	279	284	Right-handed alpha
Helix 19	AC1	D	285	286	Right-handed 310
Helix 20	AC2	D	287	291	Right-handed 310
Helix 21	AC3	D	306	319	Right-handed alpha
Helix 22	AC4	D	340	352	Right-handed alpha
Helix 23	AC5	D	411	416	Right-handed alpha
Helix 24	AC6	D	419	440	Right-handed alpha
Helix 25	AC7	D	442	453	Right-handed alpha
Helix 26	AC8	D	463	475	Right-handed alpha
Helix 27	AC9	D	479	482	Right-handed 310
Helix 28	AD1	D	483	488	Right-handed alpha
Helix 29	AD2	D	498	506	Right-handed alpha
Helix 30	AD3	D	507	517	Right-handed alpha
Helix 31	AD4	D	522	527	Right-handed alpha
Helix 32	AD5	D	527	538	Right-handed alpha
Helix 33	AD6	D	547	562	Right-handed alpha
Helix 34	AD7	D	569	579	Right-handed alpha
Helix 35	AD8	D	587	612	Right-handed alpha

There are 5 sheets in PDB entry 8JFW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	29	first strand
Strand 2	A	63	64	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	142	145	first strand
Strand 2	D	260	263	parallel
Strand 3	D	267	269	anti-parallel
Strand 4	D	356	358	parallel
Strand 5	D	375	378	parallel
Strand 6	D	367	370	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	213	215	first strand
Strand 2	D	182	184	parallel
Strand 3	D	153	156	parallel
Strand 4	D	392	397	anti-parallel
Strand 5	D	403	410	anti-parallel
Strand 6	D	651	656	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	320	321	first strand
Strand 2	D	337	339	parallel
Strand 3	D	327	329	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	460	462	first strand
Strand 2	D	495	497	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JFW

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JFW