Analysis of interatomic Contacts of Structural Units in PDB entry:
8JFY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JFY entry

There are 4 chains in PDB entry 8JFY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 149
D
 MET 1GLN 605
B
 MET 1LYS 149
C
 MET 1GLN 605
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 8JFY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 5Right-handed 310
Helix 2
AA2
A
6 21Right-handed alpha
Helix 3
AA3
A
29 40Right-handed alpha
Helix 4
AA4
A
45 56Right-handed alpha
Helix 5
AA5
A
66 79Right-handed alpha
Helix 6
AA6
A
81 94Right-handed alpha
Helix 7
AA7
A
102 114Right-handed alpha
Helix 8
AA8
A
118 130Right-handed alpha
Helix 9
AA9
A
138 148Right-handed alpha
Helix 10
AB1
D
2 29Right-handed alpha
Helix 11
AB2
D
30 44Right-handed alpha
Helix 12
AB3
D
44 52Right-handed alpha
Helix 13
AB4
D
101 114Right-handed alpha
Helix 14
AB5
D
121 139Right-handed alpha
Helix 15
AB6
D
162 174Right-handed alpha
Helix 16
AB7
D
194 209Right-handed alpha
Helix 17
AB8
D
222 230Right-handed alpha
Helix 18
AB9
D
230 239Right-handed alpha
Helix 19
AC1
D
242 257Right-handed alpha
Helix 20
AC2
D
279 284Right-handed alpha
Helix 21
AC3
D
306 319Right-handed alpha
Helix 22
AC4
D
340 352Right-handed alpha
Helix 23
AC5
D
413 418Right-handed 310
Helix 24
AC6
D
427 439Right-handed alpha
Helix 25
AC7
D
442 454Right-handed alpha
Helix 26
AC8
D
463 474Right-handed alpha
Helix 27
AC9
D
479 488Right-handed alpha
Helix 28
AD1
D
498 507Right-handed alpha
Helix 29
AD2
D
507 513Right-handed alpha
Helix 30
AD3
D
519 526Right-handed alpha
Helix 31
AD4
D
530 539Right-handed alpha
Helix 32
AD5
D
547 559Right-handed alpha
Helix 33
AD6
D
567 579Right-handed alpha
Helix 34
AD7
D
587 605Right-handed alpha
Helix 35
AD8
B
1 5Right-handed 310
Helix 36
AD9
B
6 21Right-handed alpha
Helix 37
AE1
B
29 40Right-handed alpha
Helix 38
AE2
B
45 56Right-handed alpha
Helix 39
AE3
B
66 79Right-handed alpha
Helix 40
AE4
B
81 94Right-handed alpha
Helix 41
AE5
B
102 114Right-handed alpha
Helix 42
AE6
B
118 130Right-handed alpha
Helix 43
AE7
B
138 148Right-handed alpha
Helix 44
AE8
C
2 29Right-handed alpha
Helix 45
AE9
C
30 44Right-handed alpha
Helix 46
AF1
C
44 52Right-handed alpha
Helix 47
AF2
C
101 114Right-handed alpha
Helix 48
AF3
C
121 139Right-handed alpha
Helix 49
AF4
C
162 174Right-handed alpha
Helix 50
AF5
C
194 209Right-handed alpha
Helix 51
AF6
C
222 230Right-handed alpha
Helix 52
AF7
C
230 239Right-handed alpha
Helix 53
AF8
C
242 257Right-handed alpha
Helix 54
AF9
C
279 284Right-handed alpha
Helix 55
AG1
C
306 319Right-handed alpha
Helix 56
AG2
C
340 352Right-handed alpha
Helix 57
AG3
C
413 418Right-handed 310
Helix 58
AG4
C
427 439Right-handed alpha
Helix 59
AG5
C
442 454Right-handed alpha
Helix 60
AG6
C
463 474Right-handed alpha
Helix 61
AG7
C
479 488Right-handed alpha
Helix 62
AG8
C
498 507Right-handed alpha
Helix 63
AG9
C
507 513Right-handed alpha
Helix 64
AH1
C
519 526Right-handed alpha
Helix 65
AH2
C
530 539Right-handed alpha
Helix 66
AH3
C
547 559Right-handed alpha
Helix 67
AH4
C
567 579Right-handed alpha
Helix 68
AH5
C
587 605Right-handed alpha
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There are 10 sheets in PDB entry 8JFY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 28first strand
Strand 2
A
64 65anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
142 145first strand
Strand 2
D
260 263parallel
Strand 3
D
267 269anti-parallel
Strand 4
D
355 358parallel
Strand 5
D
375 378parallel
Strand 6
D
367 370anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
213 215first strand
Strand 2
D
182 184parallel
Strand 3
D
152 156parallel
Strand 4
D
392 398anti-parallel
Strand 5
D
403 408anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
320 321first strand
Strand 2
D
337 339parallel
Strand 3
D
327 329anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
460 462first strand
Strand 2
D
495 497anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 28first strand
Strand 2
B
64 65anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
142 145first strand
Strand 2
C
260 263parallel
Strand 3
C
267 269anti-parallel
Strand 4
C
355 358parallel
Strand 5
C
375 378parallel
Strand 6
C
367 370anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
213 215first strand
Strand 2
C
182 184parallel
Strand 3
C
152 156parallel
Strand 4
C
392 398anti-parallel
Strand 5
C
403 408anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
320 321first strand
Strand 2
C
337 339parallel
Strand 3
C
327 329anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
460 462first strand
Strand 2
C
495 497anti-parallel
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