Analysis of interatomic Contacts of Structural Units in PDB entry:
8JFZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JFZ entry

There are 6 chains in PDB entry 8JFZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	GLY 12	SER 305
C	LYS 37	TYR 1023
E	GLU 4	CYS 43
B	GLY 12	SER 305
A	LYS 37	TYR 1023
G	GLU 4	CYS 43

There are104 helices in PDB entry 8JFZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	29	62	Right-handed alpha
Helix 2	AA2	D	95	98	Right-handed 310
Helix 3	AA3	D	99	111	Right-handed alpha
Helix 4	AA4	D	200	204	Right-handed 310
Helix 5	AA5	D	221	226	Right-handed alpha
Helix 6	AA6	D	233	237	Right-handed 310
Helix 7	AA7	D	243	245	Right-handed 310
Helix 8	AA8	D	248	253	Right-handed alpha
Helix 9	AA9	C	47	56	Right-handed alpha
Helix 10	AB1	C	64	76	Right-handed alpha
Helix 11	AB2	C	87	97	Right-handed alpha
Helix 12	AB3	C	100	121	Right-handed alpha
Helix 13	AB4	C	127	161	Right-handed alpha
Helix 14	AB5	C	183	185	Right-handed 310
Helix 15	AB6	C	261	264	Right-handed 310
Helix 16	AB7	C	265	275	Right-handed alpha
Helix 17	AB8	C	282	313	Right-handed alpha
Helix 18	AB9	C	316	332	Right-handed alpha
Helix 19	AC1	C	335	354	Right-handed alpha
Helix 20	AC2	C	360	369	Right-handed alpha
Helix 21	AC3	C	415	429	Right-handed alpha
Helix 22	AC4	C	450	464	Right-handed alpha
Helix 23	AC5	C	466	474	Right-handed alpha
Helix 24	AC6	C	510	517	Right-handed alpha
Helix 25	AC7	C	531	548	Right-handed alpha
Helix 26	AC8	C	598	610	Right-handed alpha
Helix 27	AC9	C	620	632	Right-handed alpha
Helix 28	AD1	C	640	649	Right-handed alpha
Helix 29	AD2	C	656	660	Right-handed 310
Helix 30	AD3	C	667	673	Right-handed alpha
Helix 31	AD4	C	674	685	Right-handed alpha
Helix 32	AD5	C	694	696	Right-handed 310
Helix 33	AD6	C	697	709	Right-handed alpha
Helix 34	AD7	C	721	728	Right-handed alpha
Helix 35	AD8	C	739	746	Right-handed alpha
Helix 36	AD9	C	755	782	Right-handed alpha
Helix 37	AE1	C	782	797	Right-handed alpha
Helix 38	AE2	C	803	812	Right-handed alpha
Helix 39	AE3	C	815	822	Right-handed alpha
Helix 40	AE4	C	828	832	Right-handed 310
Helix 41	AE5	C	846	854	Right-handed alpha
Helix 42	AE6	C	856	877	Right-handed alpha
Helix 43	AE7	C	879	884	Right-handed alpha
Helix 44	AE8	C	885	891	Right-handed alpha
Helix 45	AE9	C	908	938	Right-handed alpha
Helix 46	AF1	C	943	948	Right-handed alpha
Helix 47	AF2	C	951	971	Right-handed alpha
Helix 48	AF3	C	984	989	Right-handed alpha
Helix 49	AF4	C	991	1012	Right-handed alpha
Helix 50	AF5	C	1015	1022	Right-handed alpha
Helix 51	AF6	E	8	13	Right-handed 310
Helix 52	AF7	E	15	40	Right-handed alpha
Helix 53	AF8	B	29	62	Right-handed alpha
Helix 54	AF9	B	95	98	Right-handed 310
Helix 55	AG1	B	99	111	Right-handed alpha
Helix 56	AG2	B	200	204	Right-handed 310
Helix 57	AG3	B	221	226	Right-handed alpha
Helix 58	AG4	B	233	237	Right-handed 310
Helix 59	AG5	B	243	245	Right-handed 310
Helix 60	AG6	B	248	253	Right-handed alpha
Helix 61	AG7	A	47	56	Right-handed alpha
Helix 62	AG8	A	64	76	Right-handed alpha
Helix 63	AG9	A	87	97	Right-handed alpha
Helix 64	AH1	A	100	121	Right-handed alpha
Helix 65	AH2	A	127	161	Right-handed alpha
Helix 66	AH3	A	183	185	Right-handed 310
Helix 67	AH4	A	261	264	Right-handed 310
Helix 68	AH5	A	265	275	Right-handed alpha
Helix 69	AH6	A	282	313	Right-handed alpha
Helix 70	AH7	A	316	332	Right-handed alpha
Helix 71	AH8	A	335	354	Right-handed alpha
Helix 72	AH9	A	360	369	Right-handed alpha
Helix 73	AI1	A	415	429	Right-handed alpha
Helix 74	AI2	A	450	464	Right-handed alpha
Helix 75	AI3	A	466	474	Right-handed alpha
Helix 76	AI4	A	510	517	Right-handed alpha
Helix 77	AI5	A	531	548	Right-handed alpha
Helix 78	AI6	A	598	610	Right-handed alpha
Helix 79	AI7	A	620	632	Right-handed alpha
Helix 80	AI8	A	640	649	Right-handed alpha
Helix 81	AI9	A	656	660	Right-handed 310
Helix 82	AJ1	A	667	673	Right-handed alpha
Helix 83	AJ2	A	674	685	Right-handed alpha
Helix 84	AJ3	A	694	696	Right-handed 310
Helix 85	AJ4	A	697	709	Right-handed alpha
Helix 86	AJ5	A	721	728	Right-handed alpha
Helix 87	AJ6	A	739	746	Right-handed alpha
Helix 88	AJ7	A	755	782	Right-handed alpha
Helix 89	AJ8	A	782	797	Right-handed alpha
Helix 90	AJ9	A	803	812	Right-handed alpha
Helix 91	AK1	A	815	822	Right-handed alpha
Helix 92	AK2	A	828	832	Right-handed 310
Helix 93	AK3	A	846	854	Right-handed alpha
Helix 94	AK4	A	856	877	Right-handed alpha
Helix 95	AK5	A	879	884	Right-handed alpha
Helix 96	AK6	A	885	891	Right-handed alpha
Helix 97	AK7	A	908	938	Right-handed alpha
Helix 98	AK8	A	943	948	Right-handed alpha
Helix 99	AK9	A	951	971	Right-handed alpha
Helix 100	AL1	A	984	989	Right-handed alpha
Helix 101	AL2	A	991	1012	Right-handed alpha
Helix 102	AL3	A	1015	1022	Right-handed alpha
Helix 103	AL4	G	8	13	Right-handed 310
Helix 104	AL5	G	15	40	Right-handed alpha

There are 20 sheets in PDB entry 8JFZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	19	first strand
Strand 2	D	24	25	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	78	81	first strand
Strand 2	D	176	181	anti-parallel
Strand 3	D	261	266	anti-parallel
Strand 4	D	228	232	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	88	92	first strand
Strand 2	D	296	304	parallel
Strand 3	D	274	280	anti-parallel
Strand 4	D	210	217	anti-parallel
Strand 5	D	239	241	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	124	125	first strand
Strand 2	D	149	150	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	176	181	first strand
Strand 2	C	168	173	anti-parallel
Strand 3	C	190	194	anti-parallel
Strand 4	C	248	260	anti-parallel
Strand 5	C	202	214	anti-parallel
Strand 6	C	224	227	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	176	181	first strand
Strand 2	C	168	173	anti-parallel
Strand 3	C	190	194	anti-parallel
Strand 4	C	248	260	anti-parallel
Strand 5	C	202	214	anti-parallel
Strand 6	C	242	243	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	356	358	first strand
Strand 2	C	748	750	anti-parallel
Strand 3	C	730	734	parallel
Strand 4	C	712	716	parallel
Strand 5	C	372	376	parallel
Strand 6	C	612	617	parallel
Strand 7	C	687	691	parallel
Strand 8	C	662	666	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	396	399	first strand
Strand 2	C	387	393	anti-parallel
Strand 3	C	583	592	anti-parallel
Strand 4	C	551	559	anti-parallel
Strand 5	C	504	509	anti-parallel
Strand 6	C	490	493	anti-parallel
Strand 7	C	476	480	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	396	399	first strand
Strand 2	C	387	393	anti-parallel
Strand 3	C	583	592	anti-parallel
Strand 4	C	518	523	parallel
Strand 5	C	526	529	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	898	899	first strand
Strand 2	C	905	906	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	19	first strand
Strand 2	B	24	25	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	81	first strand
Strand 2	B	176	181	anti-parallel
Strand 3	B	261	266	anti-parallel
Strand 4	B	228	232	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	92	first strand
Strand 2	B	296	304	parallel
Strand 3	B	274	280	anti-parallel
Strand 4	B	210	217	anti-parallel
Strand 5	B	239	241	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	125	first strand
Strand 2	B	149	150	parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	181	first strand
Strand 2	A	168	173	anti-parallel
Strand 3	A	190	194	anti-parallel
Strand 4	A	248	260	anti-parallel
Strand 5	A	202	214	anti-parallel
Strand 6	A	224	227	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	181	first strand
Strand 2	A	168	173	anti-parallel
Strand 3	A	190	194	anti-parallel
Strand 4	A	248	260	anti-parallel
Strand 5	A	202	214	anti-parallel
Strand 6	A	242	243	anti-parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	356	358	first strand
Strand 2	A	748	750	anti-parallel
Strand 3	A	730	734	parallel
Strand 4	A	712	716	parallel
Strand 5	A	372	376	parallel
Strand 6	A	612	617	parallel
Strand 7	A	687	691	parallel
Strand 8	A	662	666	parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	396	399	first strand
Strand 2	A	387	393	anti-parallel
Strand 3	A	583	592	anti-parallel
Strand 4	A	551	559	anti-parallel
Strand 5	A	504	509	anti-parallel
Strand 6	A	490	493	anti-parallel
Strand 7	A	476	480	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	396	399	first strand
Strand 2	A	387	393	anti-parallel
Strand 3	A	583	592	anti-parallel
Strand 4	A	518	523	parallel
Strand 5	A	526	529	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	898	899	first strand
Strand 2	A	905	906	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JFZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JFZ