Analysis of interatomic Contacts of Structural Units in PDB entry:
8JG2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JG2 entry

There are 2 chains in PDB entry 8JG2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0LEU 397
B
 HIS 0LEU 397
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 8JG2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 42Right-handed alpha
Helix 2
AA2
A
44 48Right-handed 310
Helix 3
AA3
A
64 72Right-handed alpha
Helix 4
AA4
A
86 88Right-handed 310
Helix 5
AA5
A
89 104Right-handed alpha
Helix 6
AA6
A
142 146Right-handed alpha
Helix 7
AA7
A
156 169Right-handed alpha
Helix 8
AA8
A
171 192Right-handed alpha
Helix 9
AA9
A
225 231Right-handed alpha
Helix 10
AB1
A
262 269Right-handed alpha
Helix 11
AB2
A
285 291Right-handed 310
Helix 12
AB3
A
292 305Right-handed alpha
Helix 13
AB4
A
307 311Right-handed 310
Helix 14
AB5
A
320 332Right-handed alpha
Helix 15
AB6
A
350 367Right-handed alpha
Helix 16
AB7
B
25 42Right-handed alpha
Helix 17
AB8
B
44 48Right-handed 310
Helix 18
AB9
B
64 72Right-handed alpha
Helix 19
AC1
B
86 88Right-handed 310
Helix 20
AC2
B
89 104Right-handed alpha
Helix 21
AC3
B
142 146Right-handed alpha
Helix 22
AC4
B
156 169Right-handed alpha
Helix 23
AC5
B
171 192Right-handed alpha
Helix 24
AC6
B
225 232Right-handed alpha
Helix 25
AC7
B
262 269Right-handed alpha
Helix 26
AC8
B
285 291Right-handed 310
Helix 27
AC9
B
292 305Right-handed alpha
Helix 28
AD1
B
307 311Right-handed 310
Helix 29
AD2
B
320 332Right-handed alpha
Helix 30
AD3
B
350 368Right-handed alpha
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There are 5 sheets in PDB entry 8JG2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 16first strand
Strand 2
A
251 261anti-parallel
Strand 3
A
109 117anti-parallel
Strand 4
A
50 54parallel
Strand 5
A
81 85parallel
Strand 6
B
81 85anti-parallel
Strand 7
B
50 54parallel
Strand 8
B
109 117parallel
Strand 9
B
251 261anti-parallel
Strand 10
B
15 16anti-parallel
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There are 18 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
313 316first strand
Strand 2
A
376 383parallel
Strand 3
A
387 395anti-parallel
Strand 4
A
274 283anti-parallel
Strand 5
A
4 11anti-parallel
Strand 6
A
251 261anti-parallel
Strand 7
A
109 117anti-parallel
Strand 8
A
50 54parallel
Strand 9
A
81 85parallel
Strand 10
B
81 85anti-parallel
Strand 11
B
50 54parallel
Strand 12
B
109 117parallel
Strand 13
B
251 261anti-parallel
Strand 14
B
4 11anti-parallel
Strand 15
B
274 283anti-parallel
Strand 16
B
387 395anti-parallel
Strand 17
B
376 383anti-parallel
Strand 18
B
313 316parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 141first strand
Strand 2
A
123 125anti-parallel
Strand 3
B
123 125anti-parallel
Strand 4
B
139 141anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 204first strand
Strand 2
A
212 214anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
202 204first strand
Strand 2
B
212 214anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il