Analysis of interatomic Contacts of Structural Units in PDB entry:
8JG3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JG3 entry

There are 2 chains in PDB entry 8JG3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 393
B
 MET 1ARG 393
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 8JG3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 42Right-handed alpha
Helix 2
AA2
A
44 48Right-handed 310
Helix 3
AA3
A
64 73Right-handed alpha
Helix 4
AA4
A
86 88Right-handed 310
Helix 5
AA5
A
89 104Right-handed alpha
Helix 6
AA6
A
142 146Right-handed alpha
Helix 7
AA7
A
157 169Right-handed alpha
Helix 8
AA8
A
171 192Right-handed alpha
Helix 9
AA9
A
224 231Right-handed alpha
Helix 10
AB1
A
244 248Right-handed 310
Helix 11
AB2
A
263 270Right-handed alpha
Helix 12
AB3
A
286 291Right-handed 310
Helix 13
AB4
A
292 306Right-handed alpha
Helix 14
AB5
A
308 312Right-handed 310
Helix 15
AB6
A
321 333Right-handed alpha
Helix 16
AB7
A
335 339Right-handed 310
Helix 17
AB8
A
344 349Right-handed alpha
Helix 18
AB9
A
354 370Right-handed alpha
Helix 19
AC1
B
25 42Right-handed alpha
Helix 20
AC2
B
44 48Right-handed 310
Helix 21
AC3
B
64 73Right-handed alpha
Helix 22
AC4
B
86 88Right-handed 310
Helix 23
AC5
B
89 104Right-handed alpha
Helix 24
AC6
B
142 146Right-handed alpha
Helix 25
AC7
B
157 169Right-handed alpha
Helix 26
AC8
B
171 192Right-handed alpha
Helix 27
AC9
B
224 231Right-handed alpha
Helix 28
AD1
B
263 270Right-handed alpha
Helix 29
AD2
B
286 291Right-handed 310
Helix 30
AD3
B
292 306Right-handed alpha
Helix 31
AD4
B
308 312Right-handed 310
Helix 32
AD5
B
321 333Right-handed alpha
Helix 33
AD6
B
335 339Right-handed 310
Helix 34
AD7
B
344 349Right-handed alpha
Helix 35
AD8
B
354 371Right-handed alpha
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There are 5 sheets in PDB entry 8JG3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 317first strand
Strand 2
A
374 381parallel
Strand 3
A
385 392anti-parallel
Strand 4
A
275 284anti-parallel
Strand 5
A
4 11anti-parallel
Strand 6
A
253 262anti-parallel
Strand 7
A
109 117anti-parallel
Strand 8
A
50 54parallel
Strand 9
A
81 85parallel
Strand 10
B
81 85anti-parallel
Strand 11
B
50 54parallel
Strand 12
B
109 117parallel
Strand 13
B
252 262anti-parallel
Strand 14
B
15 16anti-parallel
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There are 18 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 317first strand
Strand 2
A
374 381parallel
Strand 3
A
385 392anti-parallel
Strand 4
A
275 284anti-parallel
Strand 5
A
4 11anti-parallel
Strand 6
A
253 262anti-parallel
Strand 7
A
109 117anti-parallel
Strand 8
A
50 54parallel
Strand 9
A
81 85parallel
Strand 10
B
81 85anti-parallel
Strand 11
B
50 54parallel
Strand 12
B
109 117parallel
Strand 13
B
252 262anti-parallel
Strand 14
B
4 11anti-parallel
Strand 15
B
275 284anti-parallel
Strand 16
B
385 392anti-parallel
Strand 17
B
374 381anti-parallel
Strand 18
B
314 317parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 141first strand
Strand 2
A
123 125anti-parallel
Strand 3
B
123 125anti-parallel
Strand 4
B
140 141anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 150first strand
Strand 2
A
155 156anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 150first strand
Strand 2
B
155 156anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il