Analysis of interatomic Contacts of Structural Units in PDB entry:
8JG5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JG5 entry

There are 7 chains in PDB entry 8JG5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 50	ALA 533
B	ALA 12	THR 532
C	GLU 1	ALA 170
D	SER 2	ALA 161
E	GLU 1	ILE 168
F	SER 2	ALA 161
G	VAL 49	ALA 533

There are 45 helices in PDB entry 8JG5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	53	59	Right-handed alpha
Helix 2	AA2	A	86	89	Right-handed 310
Helix 3	AA3	A	90	99	Right-handed alpha
Helix 4	AA4	A	138	143	Right-handed alpha
Helix 5	AA5	A	196	201	Right-handed alpha
Helix 6	AA6	A	284	288	Right-handed 310
Helix 7	AA7	A	361	365	Right-handed 310
Helix 8	AA8	A	452	462	Right-handed alpha
Helix 9	AA9	A	505	509	Right-handed 310
Helix 10	AB1	B	14	19	Right-handed alpha
Helix 11	AB2	B	53	59	Right-handed alpha
Helix 12	AB3	B	86	89	Right-handed 310
Helix 13	AB4	B	90	98	Right-handed alpha
Helix 14	AB5	B	138	143	Right-handed alpha
Helix 15	AB6	B	198	202	Right-handed 310
Helix 16	AB7	B	284	288	Right-handed 310
Helix 17	AB8	B	313	317	Right-handed 310
Helix 18	AB9	B	361	365	Right-handed 310
Helix 19	AC1	B	452	462	Right-handed alpha
Helix 20	AC2	B	504	509	Right-handed 310
Helix 21	AC3	C	62	65	Right-handed 310
Helix 22	AC4	C	123	129	Right-handed alpha
Helix 23	AC5	C	134	139	Right-handed alpha
Helix 24	AC6	C	141	160	Right-handed alpha
Helix 25	AC7	C	161	169	Right-handed alpha
Helix 26	AC8	D	81	85	Right-handed 310
Helix 27	AC9	D	115	121	Right-handed alpha
Helix 28	AD1	D	122	152	Right-handed alpha
Helix 29	AD2	D	152	161	Right-handed alpha
Helix 30	AD3	E	28	32	Right-handed 310
Helix 31	AD4	E	61	65	Right-handed 310
Helix 32	AD5	E	87	91	Right-handed 310
Helix 33	AD6	E	124	131	Right-handed alpha
Helix 34	AD7	E	131	168	Right-handed alpha
Helix 35	AD8	F	81	85	Right-handed 310
Helix 36	AD9	F	122	131	Right-handed alpha
Helix 37	AE1	F	134	161	Right-handed alpha
Helix 38	AE2	G	53	59	Right-handed alpha
Helix 39	AE3	G	86	89	Right-handed 310
Helix 40	AE4	G	90	100	Right-handed alpha
Helix 41	AE5	G	138	143	Right-handed alpha
Helix 42	AE6	G	226	230	Right-handed 310
Helix 43	AE7	G	238	242	Right-handed 310
Helix 44	AE8	G	452	462	Right-handed alpha
Helix 45	AE9	G	505	509	Right-handed 310

There are 29 sheets in PDB entry 8JG5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	70	first strand
Strand 2	A	203	211	anti-parallel
Strand 3	A	107	114	anti-parallel
Strand 4	A	158	162	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	84	first strand
Strand 2	A	180	190	anti-parallel
Strand 3	A	120	128	anti-parallel
Strand 4	A	147	151	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	172	first strand
Strand 2	A	102	104	anti-parallel
Strand 3	A	216	217	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	253	255	first strand
Strand 2	A	427	434	anti-parallel
Strand 3	A	446	447	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	253	255	first strand
Strand 2	A	427	434	anti-parallel
Strand 3	A	495	497	anti-parallel
Strand 4	A	482	489	anti-parallel
Strand 5	A	470	477	anti-parallel
Strand 6	A	514	521	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	353	first strand
Strand 2	A	330	337	anti-parallel
Strand 3	A	377	387	anti-parallel
Strand 4	A	290	295	anti-parallel
Strand 5	A	301	305	anti-parallel
Strand 6	A	367	368	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	70	first strand
Strand 2	B	203	211	anti-parallel
Strand 3	B	107	112	anti-parallel
Strand 4	B	158	162	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	84	first strand
Strand 2	B	180	187	anti-parallel
Strand 3	B	122	128	anti-parallel
Strand 4	B	147	151	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	171	172	first strand
Strand 2	B	102	104	anti-parallel
Strand 3	B	216	217	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	253	255	first strand
Strand 2	B	427	434	anti-parallel
Strand 3	B	446	449	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	253	255	first strand
Strand 2	B	427	434	anti-parallel
Strand 3	B	495	497	anti-parallel
Strand 4	B	483	489	anti-parallel
Strand 5	B	470	476	anti-parallel
Strand 6	B	514	521	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	349	353	first strand
Strand 2	B	330	337	anti-parallel
Strand 3	B	377	387	anti-parallel
Strand 4	B	291	295	anti-parallel
Strand 5	B	299	305	anti-parallel
Strand 6	B	367	373	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	6	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	68	73	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	60	first strand
Strand 2	C	44	51	anti-parallel
Strand 3	C	34	40	anti-parallel
Strand 4	C	92	99	anti-parallel
Strand 5	C	107	110	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	60	first strand
Strand 2	C	44	51	anti-parallel
Strand 3	C	34	40	anti-parallel
Strand 4	C	92	99	anti-parallel
Strand 5	C	114	116	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	11	first strand
Strand 2	D	105	108	parallel
Strand 3	D	87	93	anti-parallel
Strand 4	D	35	40	anti-parallel
Strand 5	D	47	50	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	11	first strand
Strand 2	D	105	108	parallel
Strand 3	D	87	93	anti-parallel
Strand 4	D	99	101	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	23	first strand
Strand 2	D	72	77	anti-parallel
Strand 3	D	64	69	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	6	first strand
Strand 2	E	17	25	anti-parallel
Strand 3	E	78	84	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	11	first strand
Strand 2	E	114	117	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	34	39	anti-parallel
Strand 5	E	45	51	anti-parallel
Strand 6	E	58	59	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	11	first strand
Strand 2	E	114	117	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	107	110	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	18	23	first strand
Strand 2	F	72	77	anti-parallel
Strand 3	F	65	69	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	47	50	first strand
Strand 2	F	35	40	anti-parallel
Strand 3	F	87	93	anti-parallel
Strand 4	F	99	101	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	61	70	first strand
Strand 2	G	203	211	anti-parallel
Strand 3	G	107	113	anti-parallel
Strand 4	G	158	162	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	79	84	first strand
Strand 2	G	180	191	anti-parallel
Strand 3	G	119	128	anti-parallel
Strand 4	G	147	151	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	171	172	first strand
Strand 2	G	102	104	anti-parallel
Strand 3	G	216	217	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	253	255	first strand
Strand 2	G	430	432	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	290	292	first strand
Strand 2	G	380	387	anti-parallel
Strand 3	G	330	334	anti-parallel
Strand 4	G	350	353	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	427	428	first strand
Strand 2	G	494	497	anti-parallel
Strand 3	G	483	490	anti-parallel
Strand 4	G	470	476	anti-parallel
Strand 5	G	514	521	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JG5

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JG5