Analysis of interatomic Contacts of Structural Units in PDB entry:
8JG7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JG7 entry

There are 4 chains in PDB entry 8JG7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 67	ALA 483
C	THR 67	LYS 482
D	THR 67	ALA 483
E	THR 67	ALA 484

There are 63 helices in PDB entry 8JG7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	77	82	Right-handed alpha
Helix 2	AA2	A	82	105	Right-handed alpha
Helix 3	AA3	A	117	124	Right-handed 310
Helix 4	AA4	A	144	159	Right-handed alpha
Helix 5	AA5	A	173	189	Right-handed alpha
Helix 6	AA6	A	201	212	Right-handed alpha
Helix 7	AA7	A	227	237	Right-handed alpha
Helix 8	AA8	A	259	269	Right-handed alpha
Helix 9	AA9	A	273	275	Right-handed 310
Helix 10	AB1	A	285	293	Right-handed 310
Helix 11	AB2	A	329	334	Right-handed alpha
Helix 12	AB3	A	355	394	Right-handed alpha
Helix 13	AB4	A	416	421	Right-handed alpha
Helix 14	AB5	A	439	458	Right-handed alpha
Helix 15	AB6	A	467	472	Right-handed alpha
Helix 16	AB7	A	473	476	Right-handed 310
Helix 17	AB8	C	77	82	Right-handed alpha
Helix 18	AB9	C	82	105	Right-handed alpha
Helix 19	AC1	C	117	124	Right-handed 310
Helix 20	AC2	C	144	159	Right-handed alpha
Helix 21	AC3	C	173	189	Right-handed alpha
Helix 22	AC4	C	201	212	Right-handed alpha
Helix 23	AC5	C	227	237	Right-handed alpha
Helix 24	AC6	C	259	269	Right-handed alpha
Helix 25	AC7	C	285	293	Right-handed 310
Helix 26	AC8	C	329	334	Right-handed alpha
Helix 27	AC9	C	355	394	Right-handed alpha
Helix 28	AD1	C	416	421	Right-handed alpha
Helix 29	AD2	C	439	458	Right-handed alpha
Helix 30	AD3	C	467	472	Right-handed alpha
Helix 31	AD4	C	473	476	Right-handed 310
Helix 32	AD5	C	478	482	Right-handed 310
Helix 33	AD6	D	77	82	Right-handed alpha
Helix 34	AD7	D	82	105	Right-handed alpha
Helix 35	AD8	D	117	124	Right-handed 310
Helix 36	AD9	D	144	159	Right-handed alpha
Helix 37	AE1	D	173	189	Right-handed alpha
Helix 38	AE2	D	201	212	Right-handed alpha
Helix 39	AE3	D	227	237	Right-handed alpha
Helix 40	AE4	D	259	269	Right-handed alpha
Helix 41	AE5	D	273	275	Right-handed 310
Helix 42	AE6	D	285	293	Right-handed 310
Helix 43	AE7	D	329	334	Right-handed alpha
Helix 44	AE8	D	355	394	Right-handed alpha
Helix 45	AE9	D	416	421	Right-handed alpha
Helix 46	AF1	D	439	458	Right-handed alpha
Helix 47	AF2	D	467	472	Right-handed alpha
Helix 48	AF3	D	473	476	Right-handed 310
Helix 49	AF4	E	77	82	Right-handed alpha
Helix 50	AF5	E	82	105	Right-handed alpha
Helix 51	AF6	E	117	124	Right-handed 310
Helix 52	AF7	E	144	159	Right-handed alpha
Helix 53	AF8	E	173	189	Right-handed alpha
Helix 54	AF9	E	201	211	Right-handed alpha
Helix 55	AG1	E	227	237	Right-handed alpha
Helix 56	AG2	E	259	269	Right-handed alpha
Helix 57	AG3	E	285	293	Right-handed 310
Helix 58	AG4	E	329	334	Right-handed alpha
Helix 59	AG5	E	355	394	Right-handed alpha
Helix 60	AG6	E	416	421	Right-handed alpha
Helix 61	AG7	E	439	458	Right-handed alpha
Helix 62	AG8	E	467	472	Right-handed alpha
Helix 63	AG9	E	473	476	Right-handed 310

There are 8 sheets in PDB entry 8JG7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	171	first strand
Strand 2	A	323	328	anti-parallel
Strand 3	A	307	311	anti-parallel
Strand 4	A	277	282	parallel
Strand 5	A	243	248	parallel
Strand 6	A	193	197	parallel
Strand 7	A	215	218	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	398	399	first strand
Strand 2	A	406	410	anti-parallel
Strand 3	A	429	433	anti-parallel
Strand 4	A	424	426	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	166	171	first strand
Strand 2	C	323	328	anti-parallel
Strand 3	C	307	311	anti-parallel
Strand 4	C	277	282	parallel
Strand 5	C	243	248	parallel
Strand 6	C	193	197	parallel
Strand 7	C	215	218	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	398	399	first strand
Strand 2	C	406	410	anti-parallel
Strand 3	C	429	433	anti-parallel
Strand 4	C	424	426	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	166	171	first strand
Strand 2	D	323	328	anti-parallel
Strand 3	D	307	311	anti-parallel
Strand 4	D	277	282	parallel
Strand 5	D	243	248	parallel
Strand 6	D	193	197	parallel
Strand 7	D	215	218	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	398	399	first strand
Strand 2	D	406	410	anti-parallel
Strand 3	D	429	433	anti-parallel
Strand 4	D	424	426	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	166	171	first strand
Strand 2	E	323	328	anti-parallel
Strand 3	E	307	311	anti-parallel
Strand 4	E	277	282	parallel
Strand 5	E	243	248	parallel
Strand 6	E	193	197	parallel
Strand 7	E	215	218	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	398	399	first strand
Strand 2	E	406	410	anti-parallel
Strand 3	E	429	433	anti-parallel
Strand 4	E	424	426	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JG7

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JG7