Analysis of interatomic Contacts of Structural Units in PDB entry:
8JG9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JG9 entry

There are 8 chains in PDB entry 8JG9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 1053
B	U 10	U 97
D	MET 1	GLY 1053
E	U 10	U 97
F	SER 0	GLU 170
G	A -14	A 10
H	T -1	A 23
C	SER 0	GLU 170

There are117 helices in PDB entry 8JG9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	40	74	Right-handed alpha
Helix 2	AA2	A	87	96	Right-handed alpha
Helix 3	AA3	A	101	115	Right-handed alpha
Helix 4	AA4	A	120	124	Right-handed 310
Helix 5	AA5	A	133	145	Right-handed alpha
Helix 6	AA6	A	149	161	Right-handed alpha
Helix 7	AA7	A	172	188	Right-handed alpha
Helix 8	AA8	A	194	207	Right-handed alpha
Helix 9	AA9	A	225	235	Right-handed alpha
Helix 10	AB1	A	250	265	Right-handed alpha
Helix 11	AB2	A	276	291	Right-handed alpha
Helix 12	AB3	A	295	304	Right-handed alpha
Helix 13	AB4	A	306	308	Right-handed 310
Helix 14	AB5	A	326	336	Right-handed alpha
Helix 15	AB6	A	338	343	Right-handed alpha
Helix 16	AB7	A	344	358	Right-handed alpha
Helix 17	AB8	A	360	371	Right-handed alpha
Helix 18	AB9	A	376	384	Right-handed alpha
Helix 19	AC1	A	396	410	Right-handed alpha
Helix 20	AC2	A	413	422	Right-handed alpha
Helix 21	AC3	A	438	444	Right-handed alpha
Helix 22	AC4	A	447	469	Right-handed alpha
Helix 23	AC5	A	483	513	Right-handed alpha
Helix 24	AC6	A	515	519	Right-handed 310
Helix 25	AC7	A	520	530	Right-handed alpha
Helix 26	AC8	A	542	549	Right-handed alpha
Helix 27	AC9	A	560	565	Right-handed alpha
Helix 28	AD1	A	568	570	Right-handed 310
Helix 29	AD2	A	577	584	Right-handed alpha
Helix 30	AD3	A	587	594	Right-handed alpha
Helix 31	AD4	A	600	614	Right-handed alpha
Helix 32	AD5	A	615	617	Right-handed 310
Helix 33	AD6	A	619	627	Right-handed alpha
Helix 34	AD7	A	634	646	Right-handed alpha
Helix 35	AD8	A	650	667	Right-handed alpha
Helix 36	AD9	A	677	688	Right-handed alpha
Helix 37	AE1	A	698	714	Right-handed alpha
Helix 38	AE2	A	718	720	Right-handed 310
Helix 39	AE3	A	721	730	Right-handed alpha
Helix 40	AE4	A	746	755	Right-handed alpha
Helix 41	AE5	A	760	766	Right-handed alpha
Helix 42	AE6	A	814	823	Right-handed alpha
Helix 43	AE7	A	824	827	Right-handed 310
Helix 44	AE8	A	828	833	Right-handed alpha
Helix 45	AE9	A	833	847	Right-handed alpha
Helix 46	AF1	A	852	862	Right-handed alpha
Helix 47	AF2	A	943	954	Right-handed alpha
Helix 48	AF3	A	1000	1007	Right-handed alpha
Helix 49	AF4	D	40	74	Right-handed alpha
Helix 50	AF5	D	87	96	Right-handed alpha
Helix 51	AF6	D	101	115	Right-handed alpha
Helix 52	AF7	D	120	124	Right-handed 310
Helix 53	AF8	D	133	145	Right-handed alpha
Helix 54	AF9	D	149	161	Right-handed alpha
Helix 55	AG1	D	172	188	Right-handed alpha
Helix 56	AG2	D	194	207	Right-handed alpha
Helix 57	AG3	D	225	235	Right-handed alpha
Helix 58	AG4	D	250	265	Right-handed alpha
Helix 59	AG5	D	276	291	Right-handed alpha
Helix 60	AG6	D	295	304	Right-handed alpha
Helix 61	AG7	D	306	308	Right-handed 310
Helix 62	AG8	D	326	336	Right-handed alpha
Helix 63	AG9	D	338	343	Right-handed alpha
Helix 64	AH1	D	344	358	Right-handed alpha
Helix 65	AH2	D	360	371	Right-handed alpha
Helix 66	AH3	D	376	384	Right-handed alpha
Helix 67	AH4	D	396	410	Right-handed alpha
Helix 68	AH5	D	413	422	Right-handed alpha
Helix 69	AH6	D	438	444	Right-handed alpha
Helix 70	AH7	D	447	469	Right-handed alpha
Helix 71	AH8	D	483	513	Right-handed alpha
Helix 72	AH9	D	515	519	Right-handed 310
Helix 73	AI1	D	520	530	Right-handed alpha
Helix 74	AI2	D	542	549	Right-handed alpha
Helix 75	AI3	D	560	565	Right-handed alpha
Helix 76	AI4	D	568	570	Right-handed 310
Helix 77	AI5	D	577	584	Right-handed alpha
Helix 78	AI6	D	587	594	Right-handed alpha
Helix 79	AI7	D	600	614	Right-handed alpha
Helix 80	AI8	D	615	617	Right-handed 310
Helix 81	AI9	D	619	627	Right-handed alpha
Helix 82	AJ1	D	634	646	Right-handed alpha
Helix 83	AJ2	D	650	667	Right-handed alpha
Helix 84	AJ3	D	677	688	Right-handed alpha
Helix 85	AJ4	D	698	714	Right-handed alpha
Helix 86	AJ5	D	718	720	Right-handed 310
Helix 87	AJ6	D	721	729	Right-handed alpha
Helix 88	AJ7	D	746	755	Right-handed alpha
Helix 89	AJ8	D	760	766	Right-handed alpha
Helix 90	AJ9	D	814	823	Right-handed alpha
Helix 91	AK1	D	824	827	Right-handed 310
Helix 92	AK2	D	828	833	Right-handed alpha
Helix 93	AK3	D	833	847	Right-handed alpha
Helix 94	AK4	D	852	862	Right-handed alpha
Helix 95	AK5	D	943	954	Right-handed alpha
Helix 96	AK6	D	1000	1007	Right-handed alpha
Helix 97	AK7	F	1	10	Right-handed alpha
Helix 98	AK8	F	14	23	Right-handed alpha
Helix 99	AK9	F	25	35	Right-handed alpha
Helix 100	AL1	F	38	42	Right-handed 310
Helix 101	AL2	F	43	57	Right-handed alpha
Helix 102	AL3	F	83	95	Right-handed alpha
Helix 103	AL4	F	103	114	Right-handed alpha
Helix 104	AL5	F	116	121	Right-handed 310
Helix 105	AL6	F	129	139	Right-handed alpha
Helix 106	AL7	F	148	155	Right-handed alpha
Helix 107	AL8	C	1	10	Right-handed alpha
Helix 108	AL9	C	14	23	Right-handed alpha
Helix 109	AM1	C	25	35	Right-handed alpha
Helix 110	AM2	C	38	42	Right-handed 310
Helix 111	AM3	C	43	59	Right-handed alpha
Helix 112	AM4	C	83	95	Right-handed alpha
Helix 113	AM5	C	96	100	Right-handed 310
Helix 114	AM6	C	103	114	Right-handed alpha
Helix 115	AM7	C	116	121	Right-handed 310
Helix 116	AM8	C	129	139	Right-handed alpha
Helix 117	AM9	C	148	155	Right-handed alpha

There are 20 sheets in PDB entry 8JG9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	672	675	first strand
Strand 2	A	473	478	parallel
Strand 3	A	5	11	parallel
Strand 4	A	15	22	anti-parallel
Strand 5	A	31	35	anti-parallel
Strand 6	A	770	772	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	267	first strand
Strand 2	A	310	311	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	553	557	first strand
Strand 2	A	572	576	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	791	793	first strand
Strand 2	A	799	801	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	803	805	first strand
Strand 2	A	880	882	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	891	892	first strand
Strand 2	A	905	906	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	922	929	first strand
Strand 2	A	911	919	anti-parallel
Strand 3	A	961	966	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	933	936	first strand
Strand 2	A	939	942	anti-parallel
Strand 3	A	1050	1051	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1017	1019	first strand
Strand 2	A	991	995	anti-parallel
Strand 3	A	977	986	anti-parallel
Strand 4	A	971	974	anti-parallel
Strand 5	A	1027	1032	anti-parallel
Strand 6	A	1038	1040	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	672	675	first strand
Strand 2	D	473	478	parallel
Strand 3	D	5	11	parallel
Strand 4	D	15	22	anti-parallel
Strand 5	D	31	35	anti-parallel
Strand 6	D	770	772	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	266	267	first strand
Strand 2	D	310	311	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	553	557	first strand
Strand 2	D	572	576	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	791	793	first strand
Strand 2	D	799	801	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	803	805	first strand
Strand 2	D	880	882	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	891	892	first strand
Strand 2	D	905	906	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	922	929	first strand
Strand 2	D	911	919	anti-parallel
Strand 3	D	961	966	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	933	936	first strand
Strand 2	D	939	942	anti-parallel
Strand 3	D	1050	1051	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1017	1019	first strand
Strand 2	D	991	995	anti-parallel
Strand 3	D	977	986	anti-parallel
Strand 4	D	971	974	anti-parallel
Strand 5	D	1027	1032	anti-parallel
Strand 6	D	1038	1040	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	76	81	first strand
Strand 2	F	62	69	anti-parallel
Strand 3	F	162	169	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	81	first strand
Strand 2	C	61	69	anti-parallel
Strand 3	C	162	170	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JG9

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JG9