Analysis of interatomic Contacts of Structural Units in PDB entry:
8JGB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JGB entry

There are 6 chains in PDB entry 8JGB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
L	ARG 14	ILE 18
G	SER 8	LYS 64
A	LEU 5	LEU 353
B	ASP 5	ASN 340
R	LEU 28	PHE 278
S	VAL 2	LEU 246

There are 31 helices in PDB entry 8JGB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	10	22	Right-handed alpha
Helix 2	AA2	G	29	45	Right-handed alpha
Helix 3	AA3	G	46	48	Right-handed 310
Helix 4	AA4	G	55	59	Right-handed 310
Helix 5	AA5	A	6	31	Right-handed alpha
Helix 6	AA6	A	45	53	Right-handed alpha
Helix 7	AA7	A	207	216	Right-handed 310
Helix 8	AA8	A	242	255	Right-handed alpha
Helix 9	AA9	A	274	279	Right-handed alpha
Helix 10	AB1	A	280	281	Right-handed 310
Helix 11	AB2	A	282	286	Right-handed 310
Helix 12	AB3	A	295	309	Right-handed alpha
Helix 13	AB4	A	330	351	Right-handed alpha
Helix 14	AB5	B	7	20	Right-handed alpha
Helix 15	AB6	B	29	35	Right-handed alpha
Helix 16	AB7	R	31	36	Right-handed alpha
Helix 17	AB8	R	37	55	Right-handed alpha
Helix 18	AB9	R	59	81	Right-handed alpha
Helix 19	AC1	R	82	84	Right-handed 310
Helix 20	AC2	R	97	126	Right-handed alpha
Helix 21	AC3	R	126	133	Right-handed alpha
Helix 22	AC4	R	137	160	Right-handed alpha
Helix 23	AC5	R	176	196	Right-handed alpha
Helix 24	AC6	R	196	201	Right-handed alpha
Helix 25	AC7	R	212	228	Right-handed alpha
Helix 26	AC8	R	229	231	Right-handed 310
Helix 27	AC9	R	232	237	Right-handed alpha
Helix 28	AD1	R	238	240	Right-handed 310
Helix 29	AD2	R	251	265	Right-handed alpha
Helix 30	AD3	R	268	273	Right-handed alpha
Helix 31	AD4	S	28	32	Right-handed 310

There are 14 sheets in PDB entry 8JGB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	190	first strand
Strand 2	A	195	200	anti-parallel
Strand 3	A	34	40	parallel
Strand 4	A	220	226	parallel
Strand 5	A	263	269	parallel
Strand 6	A	319	323	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	52	first strand
Strand 2	B	335	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	134	140	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	153	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	175	180	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	218	223	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	3	7	first strand
Strand 2	S	17	25	anti-parallel
Strand 3	S	78	84	anti-parallel
Strand 4	S	68	73	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	11	12	first strand
Strand 2	S	115	119	parallel
Strand 3	S	92	99	anti-parallel
Strand 4	S	33	39	anti-parallel
Strand 5	S	45	51	anti-parallel
Strand 6	S	58	60	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	11	12	first strand
Strand 2	S	115	119	parallel
Strand 3	S	92	99	anti-parallel
Strand 4	S	110	111	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	139	141	first strand
Strand 2	S	154	160	anti-parallel
Strand 3	S	210	215	anti-parallel
Strand 4	S	202	207	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	145	147	first strand
Strand 2	S	242	245	parallel
Strand 3	S	224	230	anti-parallel
Strand 4	S	173	178	anti-parallel
Strand 5	S	185	189	anti-parallel
Strand 6	S	193	194	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	145	147	first strand
Strand 2	S	242	245	parallel
Strand 3	S	224	230	anti-parallel
Strand 4	S	237	238	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JGB

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JGB