Analysis of interatomic Contacts of Structural Units in PDB entry:
8JGF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JGF entry

There are 6 chains in PDB entry 8JGF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 4VAL 361
B
 ASP 10ASN 345
E
 VAL 1LEU 247
G
 ALA 9ARG 61
L
 ARG 10TYR 21
R
 TYR 24ARG 279
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 8JGF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 32Right-handed alpha
Helix 2
AA2
A
45 54Right-handed alpha
Helix 3
AA3
A
210 216Right-handed 310
Helix 4
AA4
A
232 245Right-handed alpha
Helix 5
AA5
A
246 250Right-handed 310
Helix 6
AA6
A
260 271Right-handed alpha
Helix 7
AA7
A
274 278Right-handed 310
Helix 8
AA8
A
279 285Right-handed 310
Helix 9
AA9
A
298 319Right-handed alpha
Helix 10
AB1
A
337 358Right-handed alpha
Helix 11
AB2
B
11 31Right-handed alpha
Helix 12
AB3
B
34 40Right-handed alpha
Helix 13
AB4
E
27 31Right-handed 310
Helix 14
AB5
E
86 90Right-handed 310
Helix 15
AB6
E
220 224Right-handed 310
Helix 16
AB7
G
10 23Right-handed alpha
Helix 17
AB8
G
28 44Right-handed alpha
Helix 18
AB9
R
26 28Right-handed 310
Helix 19
AC1
R
29 55Right-handed alpha
Helix 20
AC2
R
60 85Right-handed alpha
Helix 21
AC3
R
97 126Right-handed alpha
Helix 22
AC4
R
126 133Right-handed alpha
Helix 23
AC5
R
137 160Right-handed alpha
Helix 24
AC6
R
175 205Right-handed alpha
Helix 25
AC7
R
211 228Right-handed alpha
Helix 26
AC8
R
229 239Right-handed alpha
Helix 27
AC9
R
245 252Right-handed alpha
Helix 28
AD1
R
254 273Right-handed alpha
Helix 29
AD2
R
273 278Right-handed alpha
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There are 13 sheets in PDB entry 8JGF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 191first strand
Strand 2
A
194 200anti-parallel
Strand 3
A
33 40parallel
Strand 4
A
220 226parallel
Strand 5
A
254 259parallel
Strand 6
A
326 330parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 56first strand
Strand 2
B
341 345anti-parallel
Strand 3
B
332 336anti-parallel
Strand 4
B
320 325anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 68first strand
Strand 2
B
74 79anti-parallel
Strand 3
B
83 88anti-parallel
Strand 4
B
93 99anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 110first strand
Strand 2
B
116 121anti-parallel
Strand 3
B
125 130anti-parallel
Strand 4
B
139 145anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
151 158first strand
Strand 2
B
161 166anti-parallel
Strand 3
B
171 175anti-parallel
Strand 4
B
180 185anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
192 197first strand
Strand 2
B
203 208anti-parallel
Strand 3
B
213 217anti-parallel
Strand 4
B
223 227anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
234 239first strand
Strand 2
B
245 250anti-parallel
Strand 3
B
255 259anti-parallel
Strand 4
B
264 269anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
278 283first strand
Strand 2
B
289 294anti-parallel
Strand 3
B
299 303anti-parallel
Strand 4
B
309 313anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
2 6first strand
Strand 2
E
17 24anti-parallel
Strand 3
E
77 82anti-parallel
Strand 4
E
67 72anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
9 11first strand
Strand 2
E
114 118parallel
Strand 3
E
91 98anti-parallel
Strand 4
E
32 38anti-parallel
Strand 5
E
44 50anti-parallel
Strand 6
E
57 59anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
9 11first strand
Strand 2
E
114 118parallel
Strand 3
E
91 98anti-parallel
Strand 4
E
109 110anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
140 141first strand
Strand 2
E
155 161anti-parallel
Strand 3
E
211 216anti-parallel
Strand 4
E
203 207anti-parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
146 148first strand
Strand 2
E
243 246parallel
Strand 3
E
226 231anti-parallel
Strand 4
E
174 179anti-parallel
Strand 5
E
186 189anti-parallel
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