Analysis of interatomic Contacts of Structural Units in PDB entry:
8JGJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JGJ entry

There are 2 chains in PDB entry 8JGJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 81ALA 805
B
 GLY 81ALA 805
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 67 helices in PDB entry 8JGJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
92 112Right-handed alpha
Helix 2
AA2
A
114 157Right-handed alpha
Helix 3
AA3
A
168 173Right-handed alpha
Helix 4
AA4
A
193 198Right-handed alpha
Helix 5
AA5
A
203 233Right-handed alpha
Helix 6
AA6
A
234 237Right-handed 310
Helix 7
AA7
A
240 249Right-handed alpha
Helix 8
AA8
A
254 257Right-handed 310
Helix 9
AA9
A
258 274Right-handed alpha
Helix 10
AB1
A
283 298Right-handed alpha
Helix 11
AB2
A
300 305Right-handed alpha
Helix 12
AB3
A
307 327Right-handed alpha
Helix 13
AB4
A
328 339Right-handed alpha
Helix 14
AB5
A
347 366Right-handed alpha
Helix 15
AB6
A
386 390Right-handed 310
Helix 16
AB7
A
391 420Right-handed alpha
Helix 17
AB8
A
421 425Right-handed 310
Helix 18
AB9
A
426 443Right-handed alpha
Helix 19
AC1
A
445 450Right-handed alpha
Helix 20
AC2
A
451 461Right-handed alpha
Helix 21
AC3
A
469 473Right-handed 310
Helix 22
AC4
A
493 516Right-handed alpha
Helix 23
AC5
A
526 552Right-handed alpha
Helix 24
AC6
A
555 560Right-handed alpha
Helix 25
AC7
A
570 588Right-handed alpha
Helix 26
AC8
A
590 601Right-handed alpha
Helix 27
AC9
A
606 622Right-handed alpha
Helix 28
AD1
A
623 625Right-handed 310
Helix 29
AD2
A
628 637Right-handed alpha
Helix 30
AD3
A
653 658Right-handed alpha
Helix 31
AD4
A
676 686Right-handed alpha
Helix 32
AD5
A
709 722Right-handed alpha
Helix 33
AD6
A
767 779Right-handed alpha
Helix 34
AD7
A
797 805Right-handed alpha
Helix 35
AD8
B
92 112Right-handed alpha
Helix 36
AD9
B
114 157Right-handed alpha
Helix 37
AE1
B
168 173Right-handed alpha
Helix 38
AE2
B
193 198Right-handed alpha
Helix 39
AE3
B
203 233Right-handed alpha
Helix 40
AE4
B
234 237Right-handed 310
Helix 41
AE5
B
240 249Right-handed alpha
Helix 42
AE6
B
254 257Right-handed 310
Helix 43
AE7
B
258 274Right-handed alpha
Helix 44
AE8
B
283 298Right-handed alpha
Helix 45
AE9
B
300 305Right-handed alpha
Helix 46
AF1
B
307 327Right-handed alpha
Helix 47
AF2
B
328 339Right-handed alpha
Helix 48
AF3
B
347 366Right-handed alpha
Helix 49
AF4
B
387 390Right-handed 310
Helix 50
AF5
B
391 420Right-handed alpha
Helix 51
AF6
B
421 425Right-handed 310
Helix 52
AF7
B
426 443Right-handed alpha
Helix 53
AF8
B
451 461Right-handed alpha
Helix 54
AF9
B
469 473Right-handed 310
Helix 55
AG1
B
493 516Right-handed alpha
Helix 56
AG2
B
526 552Right-handed alpha
Helix 57
AG3
B
555 560Right-handed alpha
Helix 58
AG4
B
570 588Right-handed alpha
Helix 59
AG5
B
590 601Right-handed alpha
Helix 60
AG6
B
606 622Right-handed alpha
Helix 61
AG7
B
623 625Right-handed 310
Helix 62
AG8
B
628 637Right-handed alpha
Helix 63
AG9
B
653 658Right-handed alpha
Helix 64
AH1
B
676 686Right-handed alpha
Helix 65
AH2
B
709 722Right-handed alpha
Helix 66
AH3
B
767 779Right-handed alpha
Helix 67
AH4
B
797 805Right-handed alpha
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There are 6 sheets in PDB entry 8JGJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 161first strand
Strand 2
A
190 192anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
691 695first strand
Strand 2
A
703 708anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
782 786first strand
Strand 2
A
791 796anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
159 161first strand
Strand 2
B
190 192anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
691 695first strand
Strand 2
B
703 708anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
782 786first strand
Strand 2
B
791 796anti-parallel
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