Analysis of interatomic Contacts of Structural Units in PDB entry:
8JGN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JGN entry

There are 6 chains in PDB entry 8JGN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 68	PHE 515
B	GLU 68	PHE 515
C	GLU 68	PHE 515
D	GLU 68	PHE 515
E	GLU 68	PHE 515
F	GLU 68	PHE 515

There are145 helices in PDB entry 8JGN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	138	146	Right-handed alpha
Helix 2	AA2	A	165	170	Right-handed alpha
Helix 3	AA3	A	174	183	Right-handed alpha
Helix 4	AA4	A	186	202	Right-handed alpha
Helix 5	AA5	A	203	206	Right-handed 310
Helix 6	AA6	A	214	226	Right-handed alpha
Helix 7	AA7	A	227	229	Right-handed 310
Helix 8	AA8	A	248	271	Right-handed alpha
Helix 9	AA9	A	273	287	Right-handed alpha
Helix 10	AB1	A	302	307	Right-handed alpha
Helix 11	AB2	A	309	314	Right-handed alpha
Helix 12	AB3	A	318	328	Right-handed alpha
Helix 13	AB4	A	344	354	Right-handed alpha
Helix 14	AB5	A	361	366	Right-handed alpha
Helix 15	AB6	A	367	372	Right-handed 310
Helix 16	AB7	A	379	386	Right-handed alpha
Helix 17	AB8	A	388	393	Right-handed alpha
Helix 18	AB9	A	393	400	Right-handed alpha
Helix 19	AC1	A	414	419	Right-handed alpha
Helix 20	AC2	A	422	424	Right-handed 310
Helix 21	AC3	A	425	434	Right-handed alpha
Helix 22	AC4	A	443	448	Right-handed alpha
Helix 23	AC5	A	466	474	Right-handed alpha
Helix 24	AC6	A	496	509	Right-handed alpha
Helix 25	AC7	B	138	145	Right-handed alpha
Helix 26	AC8	B	165	170	Right-handed alpha
Helix 27	AC9	B	174	183	Right-handed alpha
Helix 28	AD1	B	187	202	Right-handed alpha
Helix 29	AD2	B	203	206	Right-handed 310
Helix 30	AD3	B	214	227	Right-handed alpha
Helix 31	AD4	B	248	271	Right-handed alpha
Helix 32	AD5	B	273	288	Right-handed alpha
Helix 33	AD6	B	302	308	Right-handed alpha
Helix 34	AD7	B	309	315	Right-handed alpha
Helix 35	AD8	B	318	328	Right-handed alpha
Helix 36	AD9	B	344	353	Right-handed alpha
Helix 37	AE1	B	360	366	Right-handed alpha
Helix 38	AE2	B	367	372	Right-handed 310
Helix 39	AE3	B	379	388	Right-handed alpha
Helix 40	AE4	B	388	393	Right-handed alpha
Helix 41	AE5	B	393	400	Right-handed alpha
Helix 42	AE6	B	414	419	Right-handed alpha
Helix 43	AE7	B	420	424	Right-handed 310
Helix 44	AE8	B	425	435	Right-handed alpha
Helix 45	AE9	B	443	448	Right-handed alpha
Helix 46	AF1	B	466	474	Right-handed alpha
Helix 47	AF2	B	491	496	Right-handed alpha
Helix 48	AF3	B	496	510	Right-handed alpha
Helix 49	AF4	C	139	145	Right-handed alpha
Helix 50	AF5	C	165	170	Right-handed alpha
Helix 51	AF6	C	174	183	Right-handed alpha
Helix 52	AF7	C	186	202	Right-handed alpha
Helix 53	AF8	C	203	206	Right-handed 310
Helix 54	AF9	C	214	226	Right-handed alpha
Helix 55	AG1	C	227	229	Right-handed 310
Helix 56	AG2	C	248	271	Right-handed alpha
Helix 57	AG3	C	273	288	Right-handed alpha
Helix 58	AG4	C	302	308	Right-handed alpha
Helix 59	AG5	C	309	314	Right-handed alpha
Helix 60	AG6	C	318	328	Right-handed alpha
Helix 61	AG7	C	344	355	Right-handed alpha
Helix 62	AG8	C	361	366	Right-handed alpha
Helix 63	AG9	C	367	372	Right-handed 310
Helix 64	AH1	C	379	393	Right-handed alpha
Helix 65	AH2	C	393	400	Right-handed alpha
Helix 66	AH3	C	414	419	Right-handed alpha
Helix 67	AH4	C	420	424	Right-handed 310
Helix 68	AH5	C	425	434	Right-handed alpha
Helix 69	AH6	C	443	448	Right-handed alpha
Helix 70	AH7	C	466	474	Right-handed alpha
Helix 71	AH8	C	491	495	Right-handed 310
Helix 72	AH9	C	496	510	Right-handed alpha
Helix 73	AI1	D	138	145	Right-handed alpha
Helix 74	AI2	D	167	172	Right-handed 310
Helix 75	AI3	D	174	183	Right-handed alpha
Helix 76	AI4	D	186	202	Right-handed alpha
Helix 77	AI5	D	203	206	Right-handed 310
Helix 78	AI6	D	214	226	Right-handed alpha
Helix 79	AI7	D	227	229	Right-handed 310
Helix 80	AI8	D	248	271	Right-handed alpha
Helix 81	AI9	D	273	288	Right-handed alpha
Helix 82	AJ1	D	302	307	Right-handed alpha
Helix 83	AJ2	D	309	314	Right-handed alpha
Helix 84	AJ3	D	318	329	Right-handed alpha
Helix 85	AJ4	D	344	355	Right-handed alpha
Helix 86	AJ5	D	361	366	Right-handed alpha
Helix 87	AJ6	D	367	371	Right-handed 310
Helix 88	AJ7	D	379	393	Right-handed alpha
Helix 89	AJ8	D	393	401	Right-handed alpha
Helix 90	AJ9	D	414	419	Right-handed alpha
Helix 91	AK1	D	420	424	Right-handed 310
Helix 92	AK2	D	425	434	Right-handed alpha
Helix 93	AK3	D	443	448	Right-handed alpha
Helix 94	AK4	D	466	475	Right-handed alpha
Helix 95	AK5	D	496	509	Right-handed alpha
Helix 96	AK6	E	138	145	Right-handed alpha
Helix 97	AK7	E	167	172	Right-handed 310
Helix 98	AK8	E	174	183	Right-handed alpha
Helix 99	AK9	E	186	202	Right-handed alpha
Helix 100	AL1	E	203	206	Right-handed 310
Helix 101	AL2	E	214	226	Right-handed alpha
Helix 102	AL3	E	227	229	Right-handed 310
Helix 103	AL4	E	248	271	Right-handed alpha
Helix 104	AL5	E	273	288	Right-handed alpha
Helix 105	AL6	E	289	292	Right-handed 310
Helix 106	AL7	E	302	307	Right-handed alpha
Helix 107	AL8	E	309	316	Right-handed alpha
Helix 108	AL9	E	318	328	Right-handed alpha
Helix 109	AM1	E	344	355	Right-handed alpha
Helix 110	AM2	E	361	366	Right-handed alpha
Helix 111	AM3	E	367	372	Right-handed 310
Helix 112	AM4	E	379	386	Right-handed alpha
Helix 113	AM5	E	388	393	Right-handed alpha
Helix 114	AM6	E	393	400	Right-handed alpha
Helix 115	AM7	E	414	419	Right-handed alpha
Helix 116	AM8	E	420	424	Right-handed 310
Helix 117	AM9	E	425	434	Right-handed alpha
Helix 118	AN1	E	443	448	Right-handed alpha
Helix 119	AN2	E	466	475	Right-handed alpha
Helix 120	AN3	E	496	510	Right-handed alpha
Helix 121	AN4	F	138	145	Right-handed alpha
Helix 122	AN5	F	165	170	Right-handed alpha
Helix 123	AN6	F	174	183	Right-handed alpha
Helix 124	AN7	F	186	202	Right-handed alpha
Helix 125	AN8	F	203	206	Right-handed 310
Helix 126	AN9	F	214	227	Right-handed alpha
Helix 127	AO1	F	248	271	Right-handed alpha
Helix 128	AO2	F	273	288	Right-handed alpha
Helix 129	AO3	F	289	292	Right-handed 310
Helix 130	AO4	F	302	308	Right-handed alpha
Helix 131	AO5	F	309	314	Right-handed alpha
Helix 132	AO6	F	318	328	Right-handed alpha
Helix 133	AO7	F	344	355	Right-handed alpha
Helix 134	AO8	F	361	366	Right-handed alpha
Helix 135	AO9	F	367	372	Right-handed 310
Helix 136	AP1	F	379	386	Right-handed alpha
Helix 137	AP2	F	388	393	Right-handed alpha
Helix 138	AP3	F	393	401	Right-handed alpha
Helix 139	AP4	F	414	419	Right-handed alpha
Helix 140	AP5	F	420	424	Right-handed 310
Helix 141	AP6	F	425	434	Right-handed alpha
Helix 142	AP7	F	443	448	Right-handed alpha
Helix 143	AP8	F	466	474	Right-handed alpha
Helix 144	AP9	F	491	495	Right-handed 310
Helix 145	AQ1	F	496	509	Right-handed alpha

There are 19 sheets in PDB entry 8JGN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	71	first strand
Strand 2	A	80	90	anti-parallel
Strand 3	A	75	77	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	71	first strand
Strand 2	A	80	90	anti-parallel
Strand 3	A	99	109	anti-parallel
Strand 4	A	149	154	anti-parallel
Strand 5	A	119	123	parallel
Strand 6	A	208	213	parallel
Strand 7	A	231	237	parallel
Strand 8	A	454	459	parallel
Strand 9	A	481	485	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	293	294	first strand
Strand 2	A	300	301	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	71	first strand
Strand 2	B	80	90	anti-parallel
Strand 3	B	75	77	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	71	first strand
Strand 2	B	80	90	anti-parallel
Strand 3	B	99	109	anti-parallel
Strand 4	B	149	153	anti-parallel
Strand 5	B	119	123	parallel
Strand 6	B	208	213	parallel
Strand 7	B	231	237	parallel
Strand 8	B	454	459	parallel
Strand 9	B	480	485	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	293	294	first strand
Strand 2	B	300	301	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	69	71	first strand
Strand 2	C	80	90	anti-parallel
Strand 3	C	75	77	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	69	71	first strand
Strand 2	C	80	90	anti-parallel
Strand 3	C	99	109	anti-parallel
Strand 4	C	151	154	anti-parallel
Strand 5	C	120	123	parallel
Strand 6	C	208	213	parallel
Strand 7	C	231	237	parallel
Strand 8	C	454	459	parallel
Strand 9	C	481	485	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	293	294	first strand
Strand 2	C	300	301	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	69	71	first strand
Strand 2	D	80	90	anti-parallel
Strand 3	D	75	77	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	69	71	first strand
Strand 2	D	80	90	anti-parallel
Strand 3	D	99	109	anti-parallel
Strand 4	D	149	154	anti-parallel
Strand 5	D	119	123	parallel
Strand 6	D	208	213	parallel
Strand 7	D	231	237	parallel
Strand 8	D	454	459	parallel
Strand 9	D	481	485	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	293	294	first strand
Strand 2	D	300	301	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	331	332	first strand
Strand 2	D	342	343	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	69	71	first strand
Strand 2	E	80	90	anti-parallel
Strand 3	E	75	77	anti-parallel

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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	69	71	first strand
Strand 2	E	80	90	anti-parallel
Strand 3	E	99	109	anti-parallel
Strand 4	E	151	154	anti-parallel
Strand 5	E	120	123	parallel
Strand 6	E	208	213	parallel
Strand 7	E	231	237	parallel
Strand 8	E	454	459	parallel
Strand 9	E	481	485	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	293	294	first strand
Strand 2	E	300	301	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	69	71	first strand
Strand 2	F	80	90	anti-parallel
Strand 3	F	75	77	anti-parallel

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There are 9 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	69	71	first strand
Strand 2	F	80	90	anti-parallel
Strand 3	F	99	109	anti-parallel
Strand 4	F	149	154	anti-parallel
Strand 5	F	119	123	parallel
Strand 6	F	208	213	parallel
Strand 7	F	231	237	parallel
Strand 8	F	454	459	parallel
Strand 9	F	481	485	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	293	294	first strand
Strand 2	F	300	301	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JGN

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JGN