Analysis of interatomic Contacts of Structural Units in PDB entry:
8JGP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JGP entry

There is 1 chain in PDB entry 8JGP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -1ASN 508
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 8JGP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 43Right-handed 310
Helix 2
AA2
A
51 72Right-handed alpha
Helix 3
AA3
A
82 88Right-handed alpha
Helix 4
AA4
A
90 103Right-handed alpha
Helix 5
AA5
A
110 126Right-handed alpha
Helix 6
AA6
A
161 169Right-handed alpha
Helix 7
AA7
A
176 194Right-handed alpha
Helix 8
AA8
A
195 201Right-handed 310
Helix 9
AA9
A
212 226Right-handed alpha
Helix 10
AB1
A
244 257Right-handed alpha
Helix 11
AB2
A
258 263Right-handed alpha
Helix 12
AB3
A
274 289Right-handed alpha
Helix 13
AB4
A
300 319Right-handed alpha
Helix 14
AB5
A
321 334Right-handed alpha
Helix 15
AB6
A
337 358Right-handed alpha
Helix 16
AB7
A
365 377Right-handed alpha
Helix 17
AB8
A
405 417Right-handed alpha
Helix 18
AB9
A
435 456Right-handed alpha
Helix 19
AC1
A
483 494Right-handed alpha
Helix 20
AC2
A
494 502Right-handed alpha
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There are 3 sheets in PDB entry 8JGP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 36first strand
Strand 2
A
13 20anti-parallel
Strand 3
A
2 8anti-parallel
Strand 4
A
77 81parallel
Strand 5
A
107 108parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 158first strand
Strand 2
A
142 147anti-parallel
Strand 3
A
132 137anti-parallel
Strand 4
A
207 211parallel
Strand 5
A
293 297parallel
Strand 6
A
241 243anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
464 471first strand
Strand 2
A
474 480anti-parallel
Strand 3
A
504 507parallel
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