Analysis of interatomic Contacts of Structural Units in PDB entry:
8JGS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JGS entry

There are 2 chains in PDB entry 8JGS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 21ALA 741
B
 TYR 21ALA 741
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 8JGS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 48Right-handed alpha
Helix 2
AA2
A
50 91Right-handed alpha
Helix 3
AA3
A
104 111Right-handed alpha
Helix 4
AA4
A
129 134Right-handed alpha
Helix 5
AA5
A
143 169Right-handed alpha
Helix 6
AA6
A
176 185Right-handed alpha
Helix 7
AA7
A
189 193Right-handed 310
Helix 8
AA8
A
194 211Right-handed alpha
Helix 9
AA9
A
220 235Right-handed alpha
Helix 10
AB1
A
236 241Right-handed alpha
Helix 11
AB2
A
242 263Right-handed alpha
Helix 12
AB3
A
264 275Right-handed alpha
Helix 13
AB4
A
282 302Right-handed alpha
Helix 14
AB5
A
322 324Right-handed 310
Helix 15
AB6
A
325 332Right-handed alpha
Helix 16
AB7
A
332 356Right-handed alpha
Helix 17
AB8
A
357 361Right-handed 310
Helix 18
AB9
A
362 379Right-handed alpha
Helix 19
AC1
A
381 386Right-handed alpha
Helix 20
AC2
A
388 397Right-handed alpha
Helix 21
AC3
A
433 452Right-handed alpha
Helix 22
AC4
A
462 489Right-handed alpha
Helix 23
AC5
A
491 496Right-handed alpha
Helix 24
AC6
A
506 524Right-handed alpha
Helix 25
AC7
A
528 537Right-handed alpha
Helix 26
AC8
A
542 558Right-handed alpha
Helix 27
AC9
A
564 572Right-handed alpha
Helix 28
AD1
A
589 594Right-handed alpha
Helix 29
AD2
A
616 623Right-handed alpha
Helix 30
AD3
A
645 659Right-handed alpha
Helix 31
AD4
A
703 714Right-handed alpha
Helix 32
AD5
A
733 741Right-handed alpha
Helix 33
AD6
B
28 47Right-handed alpha
Helix 34
AD7
B
50 91Right-handed alpha
Helix 35
AD8
B
104 111Right-handed alpha
Helix 36
AD9
B
129 134Right-handed alpha
Helix 37
AE1
B
143 169Right-handed alpha
Helix 38
AE2
B
176 185Right-handed alpha
Helix 39
AE3
B
189 193Right-handed 310
Helix 40
AE4
B
194 211Right-handed alpha
Helix 41
AE5
B
220 235Right-handed alpha
Helix 42
AE6
B
236 241Right-handed alpha
Helix 43
AE7
B
242 261Right-handed alpha
Helix 44
AE8
B
264 275Right-handed alpha
Helix 45
AE9
B
281 302Right-handed alpha
Helix 46
AF1
B
322 324Right-handed 310
Helix 47
AF2
B
325 332Right-handed alpha
Helix 48
AF3
B
332 356Right-handed alpha
Helix 49
AF4
B
357 361Right-handed 310
Helix 50
AF5
B
362 379Right-handed alpha
Helix 51
AF6
B
381 386Right-handed alpha
Helix 52
AF7
B
388 397Right-handed alpha
Helix 53
AF8
B
433 452Right-handed alpha
Helix 54
AF9
B
462 489Right-handed alpha
Helix 55
AG1
B
491 496Right-handed alpha
Helix 56
AG2
B
506 524Right-handed alpha
Helix 57
AG3
B
528 537Right-handed alpha
Helix 58
AG4
B
542 559Right-handed alpha
Helix 59
AG5
B
564 572Right-handed alpha
Helix 60
AG6
B
616 623Right-handed alpha
Helix 61
AG7
B
645 659Right-handed alpha
Helix 62
AG8
B
703 714Right-handed alpha
Helix 63
AG9
B
733 741Right-handed alpha
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There are 6 sheets in PDB entry 8JGS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 97first strand
Strand 2
A
126 128anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
627 628first strand
Strand 2
A
643 644anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
697 699first strand
Strand 2
A
718 723parallel
Strand 3
A
726 732anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 97first strand
Strand 2
B
126 128anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
627 628first strand
Strand 2
B
643 644anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
697 699first strand
Strand 2
B
718 723parallel
Strand 3
B
726 732anti-parallel
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