Analysis of interatomic Contacts of Structural Units in PDB entry:
8JGU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JGU entry

There is 1 chain in PDB entry 8JGU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 310
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 8JGU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 44Right-handed 310
Helix 2
AA2
A
51 72Right-handed alpha
Helix 3
AA3
A
82 88Right-handed alpha
Helix 4
AA4
A
90 103Right-handed alpha
Helix 5
AA5
A
110 124Right-handed alpha
Helix 6
AA6
A
161 169Right-handed alpha
Helix 7
AA7
A
176 194Right-handed alpha
Helix 8
AA8
A
195 197Right-handed 310
Helix 9
AA9
A
212 226Right-handed alpha
Helix 10
AB1
A
244 256Right-handed alpha
Helix 11
AB2
A
258 263Right-handed alpha
Helix 12
AB3
A
274 290Right-handed alpha
Helix 13
AB4
A
300 310Right-handed alpha
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There are 2 sheets in PDB entry 8JGU. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 36first strand
Strand 2
A
13 20anti-parallel
Strand 3
A
2 8anti-parallel
Strand 4
A
77 81parallel
Strand 5
A
107 108parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 158first strand
Strand 2
A
142 147anti-parallel
Strand 3
A
132 137anti-parallel
Strand 4
A
207 211parallel
Strand 5
A
293 297parallel
Strand 6
A
241 243anti-parallel
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