Analysis of interatomic Contacts of Structural Units in PDB entry:
8JGW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JGW entry

There are 2 chains in PDB entry 8JGW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 9PRO 508
B
 ARG 9PRO 508
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 8JGW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 51Right-handed 310
Helix 2
AA2
A
58 76Right-handed alpha
Helix 3
AA3
A
80 82Right-handed 310
Helix 4
AA4
A
89 95Right-handed alpha
Helix 5
AA5
A
97 107Right-handed alpha
Helix 6
AA6
A
117 133Right-handed alpha
Helix 7
AA7
A
170 177Right-handed alpha
Helix 8
AA8
A
178 181Right-handed 310
Helix 9
AA9
A
183 209Right-handed alpha
Helix 10
AB1
A
217 230Right-handed alpha
Helix 11
AB2
A
238 250Right-handed alpha
Helix 12
AB3
A
254 258Right-handed 310
Helix 13
AB4
A
264 286Right-handed alpha
Helix 14
AB5
A
296 304Right-handed alpha
Helix 15
AB6
A
313 326Right-handed alpha
Helix 16
AB7
A
329 351Right-handed alpha
Helix 17
AB8
A
356 370Right-handed alpha
Helix 18
AB9
A
371 376Right-handed 310
Helix 19
AC1
A
380 392Right-handed alpha
Helix 20
AC2
A
398 411Right-handed alpha
Helix 21
AC3
A
417 421Right-handed 310
Helix 22
AC4
A
428 445Right-handed alpha
Helix 23
AC5
A
446 447Right-handed 310
Helix 24
AC6
A
448 452Right-handed 310
Helix 25
AC7
A
474 478Right-handed 310
Helix 26
AC8
A
479 495Right-handed alpha
Helix 27
AC9
B
46 51Right-handed 310
Helix 28
AD1
B
58 76Right-handed alpha
Helix 29
AD2
B
80 82Right-handed 310
Helix 30
AD3
B
89 95Right-handed alpha
Helix 31
AD4
B
97 106Right-handed alpha
Helix 32
AD5
B
117 133Right-handed alpha
Helix 33
AD6
B
168 177Right-handed alpha
Helix 34
AD7
B
178 181Right-handed 310
Helix 35
AD8
B
183 209Right-handed alpha
Helix 36
AD9
B
217 230Right-handed alpha
Helix 37
AE1
B
238 250Right-handed alpha
Helix 38
AE2
B
264 269Right-handed alpha
Helix 39
AE3
B
270 286Right-handed alpha
Helix 40
AE4
B
296 304Right-handed alpha
Helix 41
AE5
B
313 326Right-handed alpha
Helix 42
AE6
B
329 351Right-handed alpha
Helix 43
AE7
B
356 370Right-handed alpha
Helix 44
AE8
B
371 376Right-handed 310
Helix 45
AE9
B
380 392Right-handed alpha
Helix 46
AF1
B
398 411Right-handed alpha
Helix 47
AF2
B
417 421Right-handed 310
Helix 48
AF3
B
428 445Right-handed alpha
Helix 49
AF4
B
446 447Right-handed 310
Helix 50
AF5
B
448 452Right-handed 310
Helix 51
AF6
B
474 478Right-handed 310
Helix 52
AF7
B
479 495Right-handed alpha
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There are 6 sheets in PDB entry 8JGW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 43first strand
Strand 2
A
23 31anti-parallel
Strand 3
A
12 18anti-parallel
Strand 4
A
84 88parallel
Strand 5
A
113 115parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 165first strand
Strand 2
A
149 155anti-parallel
Strand 3
A
139 144anti-parallel
Strand 4
A
212 216parallel
Strand 5
A
290 292parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
459 463first strand
Strand 2
A
466 471anti-parallel
Strand 3
A
500 505parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 43first strand
Strand 2
B
23 31anti-parallel
Strand 3
B
11 18anti-parallel
Strand 4
B
84 88parallel
Strand 5
B
113 115parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 165first strand
Strand 2
B
149 155anti-parallel
Strand 3
B
139 144anti-parallel
Strand 4
B
212 216parallel
Strand 5
B
291 292parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
459 463first strand
Strand 2
B
466 471anti-parallel
Strand 3
B
500 505parallel
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