Analysis of interatomic Contacts of Structural Units in PDB entry:
8JGX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JGX entry

There are 2 chains in PDB entry 8JGX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 4ILE 505
B
 ASP 7ASP 506
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 8JGX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
56 74Right-handed alpha
Helix 2
AA2
A
78 80Right-handed 310
Helix 3
AA3
A
89 94Right-handed 310
Helix 4
AA4
A
95 107Right-handed alpha
Helix 5
AA5
A
115 130Right-handed alpha
Helix 6
AA6
A
166 175Right-handed alpha
Helix 7
AA7
A
176 179Right-handed 310
Helix 8
AA8
A
181 197Right-handed alpha
Helix 9
AA9
A
199 207Right-handed alpha
Helix 10
AB1
A
215 228Right-handed alpha
Helix 11
AB2
A
239 252Right-handed alpha
Helix 12
AB3
A
266 269Right-handed 310
Helix 13
AB4
A
270 285Right-handed alpha
Helix 14
AB5
A
295 311Right-handed alpha
Helix 15
AB6
A
313 326Right-handed alpha
Helix 16
AB7
A
329 347Right-handed alpha
Helix 17
AB8
A
347 352Right-handed alpha
Helix 18
AB9
A
354 368Right-handed alpha
Helix 19
AC1
A
369 374Right-handed 310
Helix 20
AC2
A
378 390Right-handed alpha
Helix 21
AC3
A
396 409Right-handed alpha
Helix 22
AC4
A
415 444Right-handed alpha
Helix 23
AC5
A
478 493Right-handed alpha
Helix 24
AC6
B
45 49Right-handed 310
Helix 25
AC7
B
56 73Right-handed alpha
Helix 26
AC8
B
78 80Right-handed 310
Helix 27
AC9
B
87 93Right-handed alpha
Helix 28
AD1
B
95 105Right-handed alpha
Helix 29
AD2
B
115 129Right-handed alpha
Helix 30
AD3
B
166 175Right-handed alpha
Helix 31
AD4
B
181 198Right-handed alpha
Helix 32
AD5
B
199 207Right-handed alpha
Helix 33
AD6
B
215 228Right-handed alpha
Helix 34
AD7
B
239 251Right-handed alpha
Helix 35
AD8
B
254 258Right-handed 310
Helix 36
AD9
B
264 269Right-handed alpha
Helix 37
AE1
B
270 285Right-handed alpha
Helix 38
AE2
B
296 310Right-handed alpha
Helix 39
AE3
B
313 326Right-handed alpha
Helix 40
AE4
B
329 348Right-handed alpha
Helix 41
AE5
B
354 368Right-handed alpha
Helix 42
AE6
B
369 374Right-handed 310
Helix 43
AE7
B
378 390Right-handed alpha
Helix 44
AE8
B
396 409Right-handed alpha
Helix 45
AE9
B
415 444Right-handed alpha
Helix 46
AF1
B
478 493Right-handed alpha
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There are 6 sheets in PDB entry 8JGX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 39first strand
Strand 2
A
21 29anti-parallel
Strand 3
A
10 16anti-parallel
Strand 4
A
82 86parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 163first strand
Strand 2
A
147 153anti-parallel
Strand 3
A
137 142anti-parallel
Strand 4
A
210 214parallel
Strand 5
A
289 292parallel
Strand 6
A
237 238anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
457 460first strand
Strand 2
A
464 471anti-parallel
Strand 3
A
496 504parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 42first strand
Strand 2
B
20 29anti-parallel
Strand 3
B
10 16anti-parallel
Strand 4
B
82 86parallel
Strand 5
B
111 113parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 163first strand
Strand 2
B
147 153anti-parallel
Strand 3
B
136 142anti-parallel
Strand 4
B
210 213parallel
Strand 5
B
289 292parallel
Strand 6
B
237 238anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
455 460first strand
Strand 2
B
464 472anti-parallel
Strand 3
B
496 505parallel
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