Analysis of interatomic Contacts of Structural Units in PDB entry:
8JH7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JH7 entry

There are 4 chains in PDB entry 8JH7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	GLU 4	LYS 228
K	GLN 1	SER 120
L	ASP 2	ARG 213
D	ILE 157	VAL 494

There are 27 helices in PDB entry 8JH7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	65	68	Right-handed 310
Helix 2	AA2	H	90	94	Right-handed 310
Helix 3	AA3	H	107	112	Right-handed alpha
Helix 4	AA4	H	200	205	Right-handed alpha
Helix 5	AA5	L	123	129	Right-handed alpha
Helix 6	AA6	L	185	189	Right-handed alpha
Helix 7	AA7	D	174	178	Right-handed 310
Helix 8	AA8	D	192	211	Right-handed alpha
Helix 9	AA9	D	213	224	Right-handed alpha
Helix 10	AB1	D	228	231	Right-handed 310
Helix 11	AB2	D	232	255	Right-handed alpha
Helix 12	AB3	D	282	312	Right-handed alpha
Helix 13	AB4	D	316	322	Right-handed alpha
Helix 14	AB5	D	323	332	Right-handed alpha
Helix 15	AB6	D	333	342	Right-handed alpha
Helix 16	AB7	D	364	371	Right-handed alpha
Helix 17	AB8	D	371	395	Right-handed alpha
Helix 18	AB9	D	1002	1024	Right-handed alpha
Helix 19	AC1	D	1029	1049	Right-handed alpha
Helix 20	AC2	D	1064	1085	Right-handed alpha
Helix 21	AC3	D	1089	1098	Right-handed alpha
Helix 22	AC4	D	1098	1105	Right-handed alpha
Helix 23	AC5	D	1107	1118	Right-handed alpha
Helix 24	AC6	D	410	440	Right-handed alpha
Helix 25	AC7	D	441	453	Right-handed alpha
Helix 26	AC8	D	472	486	Right-handed alpha
Helix 27	AC9	D	487	489	Right-handed 310

There are 14 sheets in PDB entry 8JH7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	6	10	first strand
Strand 2	H	22	28	anti-parallel
Strand 3	H	81	85	anti-parallel
Strand 4	H	72	76	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	13	15	first strand
Strand 2	H	121	125	parallel
Strand 3	H	95	102	anti-parallel
Strand 4	H	36	42	anti-parallel
Strand 5	H	48	54	anti-parallel
Strand 6	H	62	63	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	134	138	first strand
Strand 2	H	151	159	anti-parallel
Strand 3	H	190	197	anti-parallel
Strand 4	H	177	179	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	134	138	first strand
Strand 2	H	151	159	anti-parallel
Strand 3	H	190	197	anti-parallel
Strand 4	H	183	184	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	165	168	first strand
Strand 2	H	208	213	anti-parallel
Strand 3	H	222	225	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3	7	first strand
Strand 2	K	19	25	anti-parallel
Strand 3	K	78	82	anti-parallel
Strand 4	K	70	73	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	12	first strand
Strand 2	K	115	119	parallel
Strand 3	K	93	99	anti-parallel
Strand 4	K	33	39	anti-parallel
Strand 5	K	46	51	anti-parallel
Strand 6	K	58	60	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	6	first strand
Strand 2	L	20	26	anti-parallel
Strand 3	L	71	76	anti-parallel
Strand 4	L	63	68	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	14	first strand
Strand 2	L	104	108	parallel
Strand 3	L	86	91	anti-parallel
Strand 4	L	34	39	anti-parallel
Strand 5	L	46	50	anti-parallel
Strand 6	L	54	55	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	14	first strand
Strand 2	L	104	108	parallel
Strand 3	L	86	91	anti-parallel
Strand 4	L	99	100	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	118	120	first strand
Strand 2	L	131	137	anti-parallel
Strand 3	L	177	184	anti-parallel
Strand 4	L	161	165	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	146	151	first strand
Strand 2	L	193	200	anti-parallel
Strand 3	L	207	212	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	260	261	first strand
Strand 2	D	272	273	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	348	349	first strand
Strand 2	D	358	359	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JH7

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JH7