Analysis of interatomic Contacts of Structural Units in PDB entry:
8JHC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JHC entry

There are 4 chains in PDB entry 8JHC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	TRP 164	GLY 499
H	GLU 4	LYS 228
K	GLN 1	SER 120
L	ASP 2	ARG 213

There are 23 helices in PDB entry 8JHC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	195	227	Right-handed alpha
Helix 2	AA2	R	236	259	Right-handed alpha
Helix 3	AA3	R	285	314	Right-handed alpha
Helix 4	AA4	R	327	336	Right-handed alpha
Helix 5	AA5	R	337	349	Right-handed alpha
Helix 6	AA6	R	367	374	Right-handed alpha
Helix 7	AA7	R	375	399	Right-handed alpha
Helix 8	AA8	R	1002	1024	Right-handed alpha
Helix 9	AA9	R	1029	1049	Right-handed alpha
Helix 10	AB1	R	1064	1086	Right-handed alpha
Helix 11	AB2	R	1088	1097	Right-handed alpha
Helix 12	AB3	R	1098	1107	Right-handed alpha
Helix 13	AB4	R	1109	1118	Right-handed alpha
Helix 14	AB5	R	413	445	Right-handed alpha
Helix 15	AB6	R	445	457	Right-handed alpha
Helix 16	AB7	R	476	487	Right-handed alpha
Helix 17	AB8	R	488	491	Right-handed 310
Helix 18	AB9	R	492	499	Right-handed alpha
Helix 19	AC1	H	90	94	Right-handed 310
Helix 20	AC2	H	107	112	Right-handed alpha
Helix 21	AC3	H	202	206	Right-handed 310
Helix 22	AC4	L	94	98	Right-handed 310
Helix 23	AC5	L	123	130	Right-handed alpha

There are 14 sheets in PDB entry 8JHC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	178	179	first strand
Strand 2	R	182	183	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	6	10	first strand
Strand 2	H	21	28	anti-parallel
Strand 3	H	81	86	anti-parallel
Strand 4	H	71	76	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	14	15	first strand
Strand 2	H	121	125	parallel
Strand 3	H	95	102	anti-parallel
Strand 4	H	36	42	anti-parallel
Strand 5	H	48	55	anti-parallel
Strand 6	H	62	63	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	134	137	first strand
Strand 2	H	149	159	anti-parallel
Strand 3	H	190	199	anti-parallel
Strand 4	H	177	179	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	134	137	first strand
Strand 2	H	149	159	anti-parallel
Strand 3	H	190	199	anti-parallel
Strand 4	H	183	184	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	165	168	first strand
Strand 2	H	208	213	anti-parallel
Strand 3	H	222	225	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3	6	first strand
Strand 2	K	19	25	anti-parallel
Strand 3	K	78	82	anti-parallel
Strand 4	K	69	73	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	12	first strand
Strand 2	K	117	119	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	58	60	first strand
Strand 2	K	46	51	anti-parallel
Strand 3	K	34	39	anti-parallel
Strand 4	K	93	99	anti-parallel
Strand 5	K	108	110	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	7	first strand
Strand 2	L	20	26	anti-parallel
Strand 3	L	71	76	anti-parallel
Strand 4	L	63	68	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	13	first strand
Strand 2	L	104	107	parallel
Strand 3	L	86	91	anti-parallel
Strand 4	L	34	39	anti-parallel
Strand 5	L	46	50	anti-parallel
Strand 6	L	54	55	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	13	first strand
Strand 2	L	104	107	parallel
Strand 3	L	86	91	anti-parallel
Strand 4	L	99	100	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	118	120	first strand
Strand 2	L	131	139	anti-parallel
Strand 3	L	176	184	anti-parallel
Strand 4	L	161	165	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	146	151	first strand
Strand 2	L	193	200	anti-parallel
Strand 3	L	207	212	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JHC

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JHC