Analysis of interatomic Contacts of Structural Units in PDB entry:
8JHE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JHE entry

There are 4 chains in PDB entry 8JHE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 4	SER 543
B	GLU 4	GLU 539
C	GLU 4	GLU 539
D	GLU 4	GLU 539

There are 81 helices in PDB entry 8JHE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	30	Right-handed alpha
Helix 2	AA2	A	73	85	Right-handed alpha
Helix 3	AA3	A	117	122	Right-handed alpha
Helix 4	AA4	A	138	151	Right-handed alpha
Helix 5	AA5	A	160	171	Right-handed alpha
Helix 6	AA6	A	179	181	Right-handed 310
Helix 7	AA7	A	182	188	Right-handed alpha
Helix 8	AA8	A	192	204	Right-handed alpha
Helix 9	AA9	A	206	210	Right-handed 310
Helix 10	AB1	A	213	224	Right-handed alpha
Helix 11	AB2	A	239	252	Right-handed alpha
Helix 12	AB3	A	291	299	Right-handed alpha
Helix 13	AB4	A	302	307	Right-handed alpha
Helix 14	AB5	A	308	313	Right-handed alpha
Helix 15	AB6	A	330	336	Right-handed 310
Helix 16	AB7	A	387	394	Right-handed alpha
Helix 17	AB8	A	435	440	Right-handed 310
Helix 18	AB9	A	442	458	Right-handed alpha
Helix 19	AC1	A	490	499	Right-handed alpha
Helix 20	AC2	A	520	539	Right-handed alpha
Helix 21	AC3	B	16	30	Right-handed alpha
Helix 22	AC4	B	73	85	Right-handed alpha
Helix 23	AC5	B	117	122	Right-handed alpha
Helix 24	AC6	B	138	151	Right-handed alpha
Helix 25	AC7	B	160	171	Right-handed alpha
Helix 26	AC8	B	179	181	Right-handed 310
Helix 27	AC9	B	182	188	Right-handed alpha
Helix 28	AD1	B	192	204	Right-handed alpha
Helix 29	AD2	B	206	210	Right-handed 310
Helix 30	AD3	B	213	224	Right-handed alpha
Helix 31	AD4	B	239	252	Right-handed alpha
Helix 32	AD5	B	291	299	Right-handed alpha
Helix 33	AD6	B	302	307	Right-handed alpha
Helix 34	AD7	B	308	313	Right-handed alpha
Helix 35	AD8	B	330	336	Right-handed 310
Helix 36	AD9	B	387	394	Right-handed alpha
Helix 37	AE1	B	435	440	Right-handed 310
Helix 38	AE2	B	442	458	Right-handed alpha
Helix 39	AE3	B	490	499	Right-handed alpha
Helix 40	AE4	B	520	538	Right-handed alpha
Helix 41	AE5	C	16	30	Right-handed alpha
Helix 42	AE6	C	73	85	Right-handed alpha
Helix 43	AE7	C	117	122	Right-handed alpha
Helix 44	AE8	C	138	151	Right-handed alpha
Helix 45	AE9	C	160	171	Right-handed alpha
Helix 46	AF1	C	179	181	Right-handed 310
Helix 47	AF2	C	182	191	Right-handed alpha
Helix 48	AF3	C	192	204	Right-handed alpha
Helix 49	AF4	C	206	210	Right-handed 310
Helix 50	AF5	C	213	224	Right-handed alpha
Helix 51	AF6	C	239	252	Right-handed alpha
Helix 52	AF7	C	291	299	Right-handed alpha
Helix 53	AF8	C	302	307	Right-handed alpha
Helix 54	AF9	C	308	313	Right-handed alpha
Helix 55	AG1	C	330	336	Right-handed 310
Helix 56	AG2	C	387	394	Right-handed alpha
Helix 57	AG3	C	435	440	Right-handed 310
Helix 58	AG4	C	442	458	Right-handed alpha
Helix 59	AG5	C	490	499	Right-handed alpha
Helix 60	AG6	C	520	539	Right-handed alpha
Helix 61	AG7	D	16	30	Right-handed alpha
Helix 62	AG8	D	73	85	Right-handed alpha
Helix 63	AG9	D	117	122	Right-handed alpha
Helix 64	AH1	D	138	151	Right-handed alpha
Helix 65	AH2	D	160	171	Right-handed alpha
Helix 66	AH3	D	179	181	Right-handed 310
Helix 67	AH4	D	182	188	Right-handed alpha
Helix 68	AH5	D	192	204	Right-handed alpha
Helix 69	AH6	D	206	210	Right-handed 310
Helix 70	AH7	D	213	224	Right-handed alpha
Helix 71	AH8	D	239	252	Right-handed alpha
Helix 72	AH9	D	291	299	Right-handed alpha
Helix 73	AI1	D	302	307	Right-handed alpha
Helix 74	AI2	D	308	313	Right-handed alpha
Helix 75	AI3	D	330	336	Right-handed 310
Helix 76	AI4	D	387	394	Right-handed alpha
Helix 77	AI5	D	435	440	Right-handed 310
Helix 78	AI6	D	442	458	Right-handed alpha
Helix 79	AI7	D	490	499	Right-handed alpha
Helix 80	AI8	D	511	515	Right-handed 310
Helix 81	AI9	D	520	538	Right-handed alpha

There are 32 sheets in PDB entry 8JHE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	257	first strand
Strand 2	A	35	38	parallel
Strand 3	A	6	13	parallel
Strand 4	A	279	289	parallel
Strand 5	A	271	276	anti-parallel
Strand 6	A	262	268	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	257	first strand
Strand 2	A	35	38	parallel
Strand 3	A	6	13	parallel
Strand 4	A	279	289	parallel
Strand 5	A	507	510	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	51	first strand
Strand 2	A	61	62	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	97	first strand
Strand 2	A	232	234	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	115	first strand
Strand 2	A	106	109	anti-parallel
Strand 3	A	350	354	parallel
Strand 4	A	360	363	anti-parallel
Strand 5	A	377	385	anti-parallel
Strand 6	A	320	327	anti-parallel
Strand 7	A	467	472	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	173	first strand
Strand 2	A	176	177	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	315	318	first strand
Strand 2	A	482	485	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	337	338	first strand
Strand 2	A	344	345	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	255	257	first strand
Strand 2	B	35	38	parallel
Strand 3	B	6	13	parallel
Strand 4	B	279	289	parallel
Strand 5	B	271	276	anti-parallel
Strand 6	B	262	268	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	255	257	first strand
Strand 2	B	35	38	parallel
Strand 3	B	6	13	parallel
Strand 4	B	279	289	parallel
Strand 5	B	507	510	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	51	first strand
Strand 2	B	61	62	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	97	first strand
Strand 2	B	232	234	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	115	first strand
Strand 2	B	106	109	anti-parallel
Strand 3	B	350	354	parallel
Strand 4	B	360	363	anti-parallel
Strand 5	B	377	385	anti-parallel
Strand 6	B	320	327	anti-parallel
Strand 7	B	467	472	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	173	first strand
Strand 2	B	176	177	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	315	318	first strand
Strand 2	B	482	485	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	337	338	first strand
Strand 2	B	344	345	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	255	257	first strand
Strand 2	C	35	38	parallel
Strand 3	C	6	13	parallel
Strand 4	C	279	289	parallel
Strand 5	C	271	276	anti-parallel
Strand 6	C	262	268	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	255	257	first strand
Strand 2	C	35	38	parallel
Strand 3	C	6	13	parallel
Strand 4	C	279	289	parallel
Strand 5	C	507	510	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	51	first strand
Strand 2	C	61	62	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	97	first strand
Strand 2	C	232	234	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	112	115	first strand
Strand 2	C	106	109	anti-parallel
Strand 3	C	350	354	parallel
Strand 4	C	360	363	anti-parallel
Strand 5	C	377	385	anti-parallel
Strand 6	C	320	327	anti-parallel
Strand 7	C	467	472	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	173	first strand
Strand 2	C	176	177	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	315	318	first strand
Strand 2	C	482	485	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	337	338	first strand
Strand 2	C	344	345	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	255	257	first strand
Strand 2	D	35	38	parallel
Strand 3	D	6	13	parallel
Strand 4	D	279	289	parallel
Strand 5	D	271	276	anti-parallel
Strand 6	D	262	268	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	255	257	first strand
Strand 2	D	35	38	parallel
Strand 3	D	6	13	parallel
Strand 4	D	279	289	parallel
Strand 5	D	507	510	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	51	first strand
Strand 2	D	61	62	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	97	first strand
Strand 2	D	232	234	anti-parallel

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There are 7 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	112	115	first strand
Strand 2	D	106	109	anti-parallel
Strand 3	D	350	354	parallel
Strand 4	D	360	363	anti-parallel
Strand 5	D	377	385	anti-parallel
Strand 6	D	320	327	anti-parallel
Strand 7	D	467	472	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	172	173	first strand
Strand 2	D	176	177	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	315	318	first strand
Strand 2	D	482	485	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	337	338	first strand
Strand 2	D	344	345	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JHE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JHE