Analysis of interatomic Contacts of Structural Units in PDB entry:
8JHG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JHG entry

There are 11 chains in PDB entry 8JHG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
K	SER 69	LEU 361
A	GLY 34	ALA 135
B	ARG 19	GLY 102
C	LYS 15	HIS 124
D	ARG 28	LYS 122
E	PRO 38	ARG 134
F	ARG 17	GLY 102
G	LYS 15	LYS 129
H	ARG 28	LYS 122
I	A 1	C 160
J	G 8	T 167

There are 43 helices in PDB entry 8JHG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	K	77	89	Right-handed alpha
Helix 2	AA2	K	89	94	Right-handed alpha
Helix 3	AA3	K	140	147	Right-handed alpha
Helix 4	AA4	K	149	159	Right-handed alpha
Helix 5	AA5	K	160	170	Right-handed alpha
Helix 6	AA6	K	171	188	Right-handed alpha
Helix 7	AA7	K	321	327	Right-handed alpha
Helix 8	AA8	K	356	361	Right-handed alpha
Helix 9	AA9	A	46	57	Right-handed alpha
Helix 10	AB1	A	63	79	Right-handed alpha
Helix 11	AB2	A	85	113	Right-handed alpha
Helix 12	AB3	A	114	116	Right-handed 310
Helix 13	AB4	A	120	132	Right-handed alpha
Helix 14	AB5	B	30	42	Right-handed alpha
Helix 15	AB6	B	49	76	Right-handed alpha
Helix 16	AB7	B	82	94	Right-handed alpha
Helix 17	AB8	C	27	36	Right-handed alpha
Helix 18	AB9	C	46	73	Right-handed alpha
Helix 19	AC1	C	79	90	Right-handed alpha
Helix 20	AC2	C	91	97	Right-handed alpha
Helix 21	AC3	D	34	46	Right-handed alpha
Helix 22	AC4	D	52	81	Right-handed alpha
Helix 23	AC5	D	87	99	Right-handed alpha
Helix 24	AC6	D	100	121	Right-handed alpha
Helix 25	AC7	E	45	55	Right-handed alpha
Helix 26	AC8	E	64	77	Right-handed alpha
Helix 27	AC9	E	85	114	Right-handed alpha
Helix 28	AD1	E	120	132	Right-handed alpha
Helix 29	AD2	F	24	29	Right-handed 310
Helix 30	AD3	F	30	42	Right-handed alpha
Helix 31	AD4	F	49	76	Right-handed alpha
Helix 32	AD5	F	82	94	Right-handed alpha
Helix 33	AD6	G	16	21	Right-handed alpha
Helix 34	AD7	G	26	37	Right-handed alpha
Helix 35	AD8	G	46	73	Right-handed alpha
Helix 36	AD9	G	79	90	Right-handed alpha
Helix 37	AE1	G	91	97	Right-handed alpha
Helix 38	AE2	G	124	128	Right-handed 310
Helix 39	AE3	H	34	46	Right-handed alpha
Helix 40	AE4	H	52	81	Right-handed alpha
Helix 41	AE5	H	87	99	Right-handed alpha
Helix 42	AE6	H	100	115	Right-handed alpha
Helix 43	AE7	H	116	121	Right-handed alpha

There are 8 sheets in PDB entry 8JHG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	196	199	first strand
Strand 2	K	210	213	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	231	233	first strand
Strand 2	K	261	264	anti-parallel
Strand 3	K	252	255	anti-parallel
Strand 4	F	20	22	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	B	80	81	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	G	100	102	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	102	first strand
Strand 2	F	96	98	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	84	first strand
Strand 2	F	80	81	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	119	first strand
Strand 2	F	45	46	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	43	first strand
Strand 2	H	85	86	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JHG

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JHG