Analysis of interatomic Contacts of Structural Units in PDB entry:
8JHI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JHI entry

There are 5 chains in PDB entry 8JHI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 1	LEU 394
B	LEU 4	ASN 340
C	THR 30	ARG 86
N	GLN 24	VAL 149
R	TRP 164	LYS 502

There are 28 helices in PDB entry 8JHI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	35	Right-handed alpha
Helix 2	AA2	A	233	238	Right-handed 310
Helix 3	AA3	A	253	278	Right-handed alpha
Helix 4	AA4	A	293	304	Right-handed alpha
Helix 5	AA5	A	307	311	Right-handed 310
Helix 6	AA6	A	312	316	Right-handed 310
Helix 7	AA7	A	331	350	Right-handed alpha
Helix 8	AA8	A	370	391	Right-handed alpha
Helix 9	AA9	B	5	26	Right-handed alpha
Helix 10	AB1	B	29	34	Right-handed alpha
Helix 11	AB2	C	31	45	Right-handed alpha
Helix 12	AB3	C	53	68	Right-handed alpha
Helix 13	AB4	N	51	55	Right-handed 310
Helix 14	AB5	N	85	88	Right-handed 310
Helix 15	AB6	N	110	114	Right-handed 310
Helix 16	AB7	R	197	225	Right-handed alpha
Helix 17	AB8	R	232	236	Right-handed 310
Helix 18	AB9	R	237	264	Right-handed alpha
Helix 19	AC1	R	283	292	Right-handed alpha
Helix 20	AC2	R	294	316	Right-handed alpha
Helix 21	AC3	R	324	326	Right-handed 310
Helix 22	AC4	R	327	336	Right-handed alpha
Helix 23	AC5	R	336	341	Right-handed alpha
Helix 24	AC6	R	344	348	Right-handed 310
Helix 25	AC7	R	375	408	Right-handed alpha
Helix 26	AC8	R	413	457	Right-handed alpha
Helix 27	AC9	R	476	490	Right-handed alpha
Helix 28	AD1	R	492	497	Right-handed alpha

There are 11 sheets in PDB entry 8JHI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	214	first strand
Strand 2	A	217	222	anti-parallel
Strand 3	A	36	42	parallel
Strand 4	A	243	247	parallel
Strand 5	A	287	289	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	52	first strand
Strand 2	B	335	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	62	first strand
Strand 2	B	71	74	anti-parallel
Strand 3	B	78	81	anti-parallel
Strand 4	B	91	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	135	139	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	165	170	anti-parallel
Strand 4	B	176	181	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	218	223	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	278	first strand
Strand 2	B	284	288	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	26	30	first strand
Strand 2	N	41	48	anti-parallel
Strand 3	N	101	106	anti-parallel
Strand 4	N	92	96	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	81	83	first strand
Strand 2	N	68	74	anti-parallel
Strand 3	N	57	62	anti-parallel
Strand 4	N	115	121	anti-parallel
Strand 5	N	145	147	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	352	354	first strand
Strand 2	R	361	363	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JHI

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JHI